Co-expression analysis

Gene ID	Gma.2266.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At2g37040: pal1 (Phe ammonia lyase 1) (HF=2e-48)
Module size	8 genes
NF	0.53
%ile	84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	0.97	Gma.2266.1.S1_s_at	BG839284	-	-	2e-48	At2g37040	pal1 (Phe ammonia lyase 1)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	Gma.10705.1.S1_a_at	CD393805	plastid glucose 6 phosphate/phosphate translocator-like	-	3e-47	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	Gma.10705.1.S1_at	CD393805	plastid glucose 6 phosphate/phosphate translocator-like	-	3e-47	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.93071.1.S1_s_at	CF808796	-	-	2e-52	At5g13420	transaldolase, putative	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.7492.1.S1_at	AW597705	-	-	1e-45	At3g22200	POP2 (POLLEN-PISTIL INCOMPATIBILITY 2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.11220.2.S1_a_at	CF920389	-	-	2e-19	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.4310.1.S1_at	BE822674	chorismate synthase	-	3e-58	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.3881.1.S1_at	X92437.1	-	-	8e-23	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig1797_x_at, orthologous to the query gene, Gma.2266.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	Contig1797_x_at	At2g37040	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig14223_at	At2g37040	-	-	2e+0	At3g61870	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig6776_s_at	At2g37040	-	-	2e-3	At1g20850	XCP2 (xylem cysteine peptidase 2)	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig13586_at	At2g37040	-	-	1e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig12443_at	At2g37040	-	-	7e-5	At1g54170	CID3 (CTC-Interacting Domain 3)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig13291_s_at	At2g37040	-	-	5e-1	At2g30340	LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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