Co-expression analysis

Gene ID Gma.2266.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At2g37040: pal1 (Phe ammonia lyase 1) (HF=2e-48)
Module size 8 genes
NF 0.53
%ile 84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8291.90.97Gma.2266.1.S1_s_atBG839284--2e-48At2g37040pal1 (Phe ammonia lyase 1)O.I.H.G.S.X.
0.5576.30.98Gma.10705.1.S1_a_atCD393805plastid glucose 6 phosphate/phosphate translocator-like-3e-47At5g54800GPT1O.I.H.G.S.X.
0.5576.30.98Gma.10705.1.S1_atCD393805plastid glucose 6 phosphate/phosphate translocator-like-3e-47At5g54800GPT1O.I.H.G.S.X.
0.5071.70.98GmaAffx.93071.1.S1_s_atCF808796--2e-52At5g13420transaldolase, putativeO.I.H.G.S.X.
0.4360.60.98Gma.7492.1.S1_atAW597705--1e-45At3g22200POP2 (POLLEN-PISTIL INCOMPATIBILITY 2)O.I.H.G.S.X.
0.4057.10.98Gma.11220.2.S1_a_atCF920389--2e-19At4g29010AIM1 (ABNORMAL INFLORESCENCE MERISTEM)O.I.H.G.S.X.
0.3346.10.97Gma.4310.1.S1_atBE822674chorismate synthase-3e-58At1g48850EMB1144 (embryo defective 1144)O.I.H.G.S.X.
0.3142.20.98Gma.3881.1.S1_atX92437.1--8e-23At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g37040, orthologous to the query gene, Gma.2266.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At2g37040818280pal1 (Phe ammonia lyase 1)encodes a protein similar to phenylalanine ammonia-lyaseO.I.H.G.S.X.
0.8089.8At1g28680839768transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.8089.8At2g30490817599C4H (CINNAMATE-4-HYDROXYLASE)Encodes a cinnamate-4-hydroxylase.O.I.H.G.S.X.
0.7184.2At2g40890818686CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis. Also affects the biosynthesis of coumarins such as scopoletin and scopolin as a branching-out-pathway from the phenylpropanoid acid level.O.I.H.G.S.X.
0.6378.1At1g516808415934CL1 (4-COUMARATE:COA LIGASE 1)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.O.I.H.G.S.X.
0.5065.3At4g34050829551caffeoyl-CoA 3-O-methyltransferase, putativeF:caffeoyl-CoA O-methyltransferase activity;P:coumarin biosynthetic process, response to cadmium ion;C:cytosol;BOPMFAO.I.H.G.S.X.
0.4050.8At1g224108388472-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeF:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPFO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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