Co-expression analysis

Gene ID	Gma.2259.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g16470: PAB1 (PROTEASOME SUBUNIT PAB1) (HF=3e-83)
Module size	7 genes
NF	0.53
%ile	84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	65.5	0.98	Gma.2259.1.S1_at	CD392275	-	-	3e-83	At1g16470	PAB1 (PROTEASOME SUBUNIT PAB1)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.17539.1.S1_at	AF034572.1	proteasome IOTA subunit	-	2e-87	At2g05840	PAA2 (20S PROTEASOME SUBUNIT PAA2)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	Gma.8648.1.S1_s_at	BU764853	-	-	5e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	GmaAffx.15307.1.S1_at	BM307140	-	-	9e-44	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.10799.1.S1_at	BG237181	-	-	4e-96	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	GmaAffx.10026.1.S1_at	BQ628569	-	-	3e-19	At5g43010	RPT4A	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.10966.1.S1_at	CD396963	-	-	8e-130	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.7	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.2	98.6	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.8	98.4	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.6	98.3	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.4	98.2	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.2	98.1	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.1	98.1	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.9	98.0	GSM191082	Soybean_Cotyledon_EN2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.9	98.0	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.8	97.9	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.7	97.8	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.7	97.8	GSM191081	Soybean_Cotyledon_EN1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.7	97.8	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.6	97.7	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.6	97.7	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM191091	Soybean_Cotyledon_SEED1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.4	97.6	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.4	97.6	GSM147943	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.3	97.5	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.3	97.5	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.1	97.3	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.0	97.2	GSM182038	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.0	97.2	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.0	97.2	GSM147942	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.0	97.2	GSM201127	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.9	97.1	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.9	97.1	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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