Co-expression analysis

Gene ID	Gma.2202.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g09010: APX4 (ASCORBATE PEROXIDASE 4) (HF=1e-30)
Module size	38 genes
NF	0.59
%ile	89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	0.94	Gma.2202.1.S1_at	CD404038	-	-	1e-30	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.96	Gma.10591.1.S1_at	CD415483	-	-	6e-28	At1g32470	glycine cleavage system H protein, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.95	Gma.12786.1.S1_at	CD413842	-	-	2e-1	At3g18890	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.95	Gma.11189.1.S1_at	CD397258	-	-	6e-10	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.95	Gma.1347.1.S1_at	BG511746	-	-	1e-10	At3g63140	CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.97	Gma.16848.1.A1_s_at	CD407892	-	-	7e-1	At2g17850	-	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.95	GmaAffx.58051.1.S1_s_at	BE209725	-	-	2e-1	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please select
0.66	84.0	0.94	GmaAffx.81790.1.S1_at	BG508508	-	-	6e-3	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.66	84.0	0.95	Gma.15868.2.A1_a_at	BE348221	-	-	3e-13	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	O.I.	H.G.	S.X.	Please select
0.66	84.0	0.94	Gma.3208.2.S1_a_at	BI968016	-	-	5e-4	At1g72610	GER1 (GERMIN-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.66	84.0	0.96	Gma.2362.1.S1_at	BQ298042	-	-	1e-8	At2g40100	LHCB4.3 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.95	Gma.5539.1.S1_at	CD403805	-	-	9e-6	At4g02530	chloroplast thylakoid lumen protein	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.95	Gma.10788.1.S1_at	CD397159	Chloroplastic ATP synthase gamma subunit (ATPC) mRNA, partial cds; nuclear gene for chloroplast product	-	7e-26	At4g04640	ATPC1	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.97	Gma.15830.1.S1_s_at	CD414210	-	-	1e+0	At2g03630	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.95	GmaAffx.4895.1.S1_at	BE804724	-	-	2e-3	At1g60950	FED A	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.95	Gma.1319.1.S1_at	CD410650	-	-	6e-3	At2g06520	PSBX (photosystem II subunit X)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.95	Gma.10892.1.S1_a_at	BG839570	-	-	1e-11	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.94	Gma.12488.1.S1_at	CD392077	-	-	2e+0	At4g29100	ethylene-responsive family protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.96	Gma.16594.1.S1_at	AW832566	-	-	2e+0	At5g65740	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.96	Gma.17709.1.S1_at	CD413509	-	-	3e+0	At3g46780	PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.95	Gma.16033.1.S1_at	BQ134078	-	-	4e+0	At4g21720	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.95	Gma.2731.2.A1_at	CD406344	-	-	1e-7	At1g20340	DRT112	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.95	GmaAffx.1301.70.S1_s_at	BE210977	-	-	1e+1	At1g04980	ATPDIL2-2 (PDI-LIKE 2-2)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.96	Gma.11189.2.A1_at	CD418596	-	-	1e-7	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.96	Gma.11037.1.S1_at	BG839382	glyceraldehyde-3-phosphate dehydrogenase A subunit	-	1e-104	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.93	Gma.17867.1.S1_at	BE658919	-	-	2e-9	At4g15510	photosystem II reaction center PsbP family protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.95	Gma.2559.1.S1_a_at	BE659665	-	-	3e-20	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.95	Gma.11116.3.S1_s_at	CD394432	-	-	1e-7	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.96	Gma.3454.1.S1_at	BQ628871	-	-	2e-6	At2g42220	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.94	Gma.1316.5.S1_at	BF067733	-	-	4e-12	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.96	Gma.3317.2.S1_a_at	CD398991	-	-	4e-18	At3g26060	ATPRX Q	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.96	Gma.12822.1.S1_at	CD391525	-	-	4e-1	At2g28610	PRS (PRESSED FLOWER)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.96	Gma.5672.3.S1_a_at	CD398658	-	-	3e-34	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.95	Gma.7690.1.S1_at	CD417505	-	-	1e+0	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.94	Gma.1316.2.S1_a_at	CD417424	-	-	4e-14	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.96	Gma.2042.1.S1_at	CD408331	-	-	3e-5	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.95	Gma.5539.1.S1_a_at	CD403805	-	-	9e-6	At4g02530	chloroplast thylakoid lumen protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.96	Gma.2466.2.S1_s_at	CD406111	-	-	1e-29	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	99.3	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.7	99.3	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.7	99.3	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.6	99.2	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.5	99.2	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.5	99.2	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.4	99.2	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.4	99.2	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.2	99.2	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.1	99.2	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.1	99.2	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.9	99.2	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.8	99.1	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.8	99.1	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.7	99.1	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.7	99.1	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.6	99.1	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.6	99.1	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.5	99.1	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.4	99.1	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.3	99.1	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.1	99.0	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.0	99.0	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.0	99.0	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.9	99.0	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.8	99.0	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.5	98.9	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.3	98.9	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.2	98.9	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.1	98.8	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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