Co-expression analysis

Gene ID	Gma.2135.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g26400: EIF4B1 (HF=7e-1)
Module size	6 genes
NF	0.77
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	0.97	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	O.I.	H.G.	S.X.	Please select
0.91	98.6	0.97	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.97	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.7046.1.S1_at	AI960403	-	-	4e-54	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
28.3	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.0	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
27.4	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the grape gene, 1617083_at, orthologous to the query gene, Gma.2135.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	1617083_at	At3g26400	-	-	3e+0	At5g62575	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	1617143_at	At3g26400	-	-	3e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.59	80.6	1612508_at	At3g26400	-	-	9e-5	At1g70330	ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1619684_at	At3g26400	-	-	1e-10	At1g49050	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1613291_at	At3g26400	-	-	4e-4	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1611600_at	At3g26400	-	-	8e-18	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.22	25.6	1621365_at	At3g26400	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1622616_at	At3g26400	-	-	4e-1	At5g42080	ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.17	18.2	1620813_at	At3g26400	hypothetical protein LOC100245718	-	2e-8	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1616784_at	At3g26400	-	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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