Co-expression analysis

Gene ID	Gma.2135.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g26400: EIF4B1 (HF=7e-1)
Module size	6 genes
NF	0.77
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	0.97	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	O.I.	H.G.	S.X.	Please select
0.91	98.6	0.97	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.97	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.7046.1.S1_at	AI960403	-	-	4e-54	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
28.3	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.0	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
27.4	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.208664.1.S1_s_at, orthologous to the query gene, Gma.2135.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	PtpAffx.208664.1.S1_s_at	At3g26400	hypothetical protein	-	2e-11	At3g26400	EIF4B1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.13760.1.S1_at	At3g26400	hypothetical protein	-	9e-3	At1g05150	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	Ptp.2962.1.A1_at	At3g26400	hypothetical protein	-	8e-16	At5g19070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.16625.1.A1_at	At3g26400	hypothetical protein	-	9e-21	At2g26140	ftsh4 (FtsH protease 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.47876.1.S1_s_at	At3g26400	hypothetical protein	-	2e-15	At3g57785	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.5102.1.A1_x_at	At3g26400	hypothetical protein	-	1e-88	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.249.18.A1_x_at	At3g26400	-	-	3e-77	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.21639.1.S1_at	At3g26400	hypothetical protein	-	4e+0	At4g22490	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.4277.1.S1_a_at	At3g26400	-	-	1e-131	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.697.1.A1_s_at	At3g26400	hypothetical protein	-	6e-10	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.7476.1.A1_s_at	At3g26400	hypothetical protein	-	4e-42	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.1502.1.S1_a_at	At3g26400	hypothetical protein	-	2e-11	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.14248.2.S1_at	At3g26400	hypothetical protein	-	3e-19	At4g36440	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.5592.1.S1_at	At3g26400	hypothetical protein	-	5e-82	At5g38480	GRF3 (GENERAL REGULATORY FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.714.1.A1_a_at	At3g26400	hypothetical protein	-	2e+0	At5g47230	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.6520.1.S1_s_at	At3g26400	hypothetical protein	-	4e-98	At3g08530	clathrin heavy chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.8035.1.A1_at	At3g26400	hypothetical protein	-	8e-3	At2g25670	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.12049.1.A1_at	At3g26400	hypothetical protein	-	2e+0	At5g56120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.4784.1.A1_s_at	At3g26400	hypothetical protein	-	8e+0	At5g27290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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