Co-expression analysis

Gene ID	Gma.2135.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g26400: EIF4B1 (HF=7e-1)
Module size	6 genes
NF	0.77
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	0.97	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	O.I.	H.G.	S.X.	Please select
0.91	98.6	0.97	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.97	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.7046.1.S1_at	AI960403	-	-	4e-54	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
28.3	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.0	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
27.4	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the barley gene, Contig20714_at, orthologous to the query gene, Gma.2135.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	Contig20714_at	At3g26400	-	-	1e+0	At1g17010	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig25177_at	At3g26400	-	-	2e-20	At1g29930	CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig2384_at	At3g26400	-	-	2e-1	At5g25570	unknown protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig23305_at	At3g26400	-	-	1e-1	At4g28890	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig13543_at	At3g26400	-	-	3e+0	At4g23520	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig19370_at	At3g26400	-	-	3e+0	At5g05610	AL1 (ALFIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig1132_s_at	At3g26400	-	-	2e-14	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.97	99.6	HM01N03w_at	At3g26400	-	-	4e+0	At4g26410	-	O.I.	H.G.	S.X.	Please select
0.97	99.6	HM09B02r_x_at	At3g26400	-	-	4e+0	At3g01960	unknown protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig6486_at	At3g26400	-	-	8e-23	At4g30780	unknown protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig6500_at	At3g26400	-	-	2e+0	At4g09180	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	Contig18049_at	At3g26400	-	-	5e-4	At4g21065	-	O.I.	H.G.	S.X.	Please select
0.97	99.6	HM03E04u_at	At3g26400	-	-	1e+1	At5g35640	-	O.I.	H.G.	S.X.	Please select
0.97	99.6	HM10P19r_at	At3g26400	-	-	1e+0	At4g03298	unknown protein	O.I.	H.G.	S.X.	Please select
0.96	99.4	Contig6485_at	At3g26400	-	-	3e-1	At5g24630	BIN4 (brassinosteroid-insensitive4)	O.I.	H.G.	S.X.	Please select
0.96	99.4	Contig6531_s_at	At3g26400	-	-	6e-1	At5g01070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.96	99.4	HM09B02r_s_at	At3g26400	-	-	4e+0	At3g01960	unknown protein	O.I.	H.G.	S.X.	Please select
0.96	99.4	Contig13999_at	At3g26400	-	-	2e+0	At1g29390	COR314-TM2	O.I.	H.G.	S.X.	Please select
0.96	99.4	Contig12396_at	At3g26400	-	-	2e+0	At3g06280	-	O.I.	H.G.	S.X.	Please select
0.96	99.4	HM10A04r_at	At3g26400	-	-	6e+0	At5g18650	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.96	99.4	Contig20810_at	At3g26400	-	-	1e+0	At5g06070	RBE (RABBIT EARS)	O.I.	H.G.	S.X.	Please select
0.94	98.9	Contig17393_at	At3g26400	-	-	5e-3	At1g22200	unknown protein	O.I.	H.G.	S.X.	Please select
0.94	98.9	Contig18578_at	At3g26400	-	-	2e+0	At1g51720	glutamate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.93	98.7	Contig16210_at	At3g26400	-	-	7e-3	At1g05470	CVP2 (COTYLEDON VASCULAR PATTERN 2)	O.I.	H.G.	S.X.	Please select
0.93	98.7	Contig19429_at	At3g26400	-	-	1e-5	At1g34260	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.93	98.7	HM02O12u_at	At3g26400	-	-	6e-1	At4g30280	XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)	O.I.	H.G.	S.X.	Please select
0.92	98.4	HM06A07r_at	At3g26400	-	-	4e+0	At1g68862	unknown protein	O.I.	H.G.	S.X.	Please select
0.92	98.4	Contig17941_at	At3g26400	-	-	8e+0	At5g54855	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig21529_at	At3g26400	-	-	7e+0	At3g44350	anac061 (Arabidopsis NAC domain containing protein 61)	O.I.	H.G.	S.X.	Please select
0.90	95.7	Contig20884_at	At3g26400	-	-	1e+0	At5g54590	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.90	95.7	Contig23137_at	At3g26400	-	-	2e-1	At4g35070	-	O.I.	H.G.	S.X.	Please select
0.86	94.8	Contig17386_at	At3g26400	-	-	2e+0	At4g04423	endo-1,3(4)-beta-glucanase	O.I.	H.G.	S.X.	Please select
0.86	94.8	Contig26580_at	At3g26400	-	-	1e+0	At5g64880	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	94.8	Contig21581_at	At3g26400	-	-	6e-4	At1g01300	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.84	94.3	Contig19445_at	At3g26400	-	-	8e-3	At4g31110	kinase	O.I.	H.G.	S.X.	Please select
0.82	93.1	Contig17917_at	At3g26400	-	-	5e+0	At5g10140	FLC (FLOWERING LOCUS C)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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