Co-expression analysis

Gene ID	Gma.2015.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g62820: calmodulin, putative (HF=2e-3)
Module size	25 genes
NF	0.49
%ile	80.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	90.8	0.98	Gma.2015.2.S1_a_at	BU765143	-	-	2e-3	At1g62820	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.98	GmaAffx.77088.2.S1_s_at	BU090015	-	-	2e-1	At2g44650	CHL-CPN10 (CHLOROPLAST CHAPERONIN 10)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.6445.1.S1_at	BE210393	-	-	2e-30	At4g03120	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.98	GmaAffx.23184.1.S1_at	BE021868	-	-	1e-66	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	GmaAffx.34172.1.S1_s_at	BF070551	-	-	5e-18	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.99	Gma.5810.2.S1_a_at	AI965339	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	Gma.2892.1.S1_at	CD398484	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	GmaAffx.91235.1.S1_s_at	CF806960	-	-	8e-45	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.99	Gma.15124.1.S1_at	BU548348	-	-	1e-41	At1g27310	NTF2A (NUCLEAR TRANSPORT FACTOR 2A)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	GmaAffx.79097.1.S1_at	BE331146	-	-	3e-1	At3g44760	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.99	Gma.17905.2.S1_at	CD393233	-	-	8e-37	At4g01320	ATSTE24	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.99	GmaAffx.8929.1.S1_at	BG551351	-	-	1e-24	At3g49100	signal recognition particle 9 kDa protein, putative / SRP9, putative	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.99	Gma.13142.2.S1_a_at	BF069870	-	-	2e-13	At5g15220	ribosomal protein L27 family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.99	GmaAffx.90062.1.S1_s_at	CF805787	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.99	GmaAffx.87924.1.S1_at	AW596893	-	-	9e-39	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	GmaAffx.1729.2.S1_at	BG726769	-	-	2e-42	At4g35410	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	GmaAffx.88721.1.S1_s_at	CK606003	-	-	5e-12	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.99	Gma.3084.2.S1_a_at	BU081126	-	-	1e+0	At2g24395	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.8179.1.S1_at	CD413439	-	-	2e-19	At3g18860	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.99	GmaAffx.92455.1.S1_s_at	CF808180	-	-	5e-34	At5g42790	PAF1	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	GmaAffx.92081.1.S1_at	CF807806	-	-	1e-3	At1g47420	-	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	GmaAffx.93437.1.S1_s_at	CF808942	-	-	3e-23	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	GmaAffx.46538.1.S1_s_at	BM732780	ribosomal protein S13	-	2e-10	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.99	Gma.5581.1.S1_at	CD392224	-	-	8e-53	At3g27430	PBB1	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.98	Gma.11094.2.S1_a_at	BU546011	-	-	1e-10	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	95.8	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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