Co-expression analysis

Gene ID	Gma.2000.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g17830: peptidase M20/M25/M40 family protein (HF=3e-21)
Module size	17 genes
NF	0.38
%ile	67.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	0.98	Gma.2000.1.S1_at	AW309844	-	-	3e-21	At4g17830	peptidase M20/M25/M40 family protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.98	Gma.2405.1.S1_at	BU546336	-	-	3e+0	At1g44835	YbaK/prolyl-tRNA synthetase family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.16767.1.S1_at	CD415303	-	-	6e-42	At1g14610	TWN2 (TWIN 2)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.8717.1.A1_s_at	BU761149	-	-	3e-117	At5g46630	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	Gma.13295.1.S1_at	CD412186	-	-	9e-46	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.8293.1.S1_at	AW507947	-	-	5e-70	At3g54540	ATGCN4	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.11943.1.S1_a_at	CD414322	-	-	9e-6	At2g45010	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.99	Gma.4208.2.S1_x_at	CD401340	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	GmaAffx.89191.1.A1_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.16127.1.S1_at	BE473742	-	-	8e-56	At1g10840	TIF3H1	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.4208.2.S1_a_at	CD401340	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.11232.1.S1_s_at	BI943460	-	-	0	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.99	Gma.11256.1.S1_at	CD401123	-	-	7e-28	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.99	Gma.954.1.S1_at	BI423790	-	-	7e-3	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.99	Gma.15883.1.S1_x_at	AF255338.1	20S proteasome subunit	-	2e-86	At1g53850	PAE1	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.99	Gma.10782.1.S1_s_at	CD410674	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.99	Gma.3626.2.S1_x_at	BQ612673	-	-	2e-60	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	96.4	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.3	96.2	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.2	96.0	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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