CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.1913.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g37620: ACT1 (ACTIN 1) (HF=0)

Module size 6 genes

NF 0.82

%ile 98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.97 Gma.1913.1.S1_at BI970928 - - 0 At2g37620 ACT1 (ACTIN 1) O.I. H.G. S.X.
0.83 92.5 0.97 Gma.1324.1.S1_at BE658235 - - 1e-131 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) O.I. H.G. S.X.
0.80 91.5 0.97 Gma.7774.1.S1_at CD401719 - - 1e-26 At3g10540 3-phosphoinositide-dependent protein kinase, putative O.I. H.G. S.X.
0.80 91.5 0.98 Gma.15367.1.S1_at CD412241 - - 7e-60 At3g59910 - O.I. H.G. S.X.
0.67 86.1 0.98 Gma.2135.1.S1_a_at BE660424 - - 7e-1 At3g26400 EIF4B1 O.I. H.G. S.X.
0.59 79.5 0.97 Gma.10004.1.S1_at BF070937 - - 6e-25 At5g36290 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.3 99.8 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.4 99.8 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.8 99.8 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the maize gene, Zm.16513.9.A1_a_at, orthologous to the query gene, Gma.1913.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.93 99.3 Zm.16513.9.A1_a_at At2g37620 - - 0 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.53 69.1 Zm.7121.2.A1_x_at At2g37620 - - 5e-6 At3g12120 FAD2 (FATTY ACID DESATURASE 2) O.I. H.G. S.X.
0.44 55.7 Zm.6244.2.S1_at At2g37620 - - 8e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) O.I. H.G. S.X.
0.44 55.7 Zm.1662.1.A1_a_at At2g37620 - - 6e-1 At5g35570 unknown protein O.I. H.G. S.X.
0.40 48.5 Zm.7122.1.A1_at At2g37620 - - 2e+0 At1g35580 CINV1 (cytosolic invertase 1) O.I. H.G. S.X.
0.39 45.6 Zm.16834.1.A1_at At2g37620 - - 4e-1 At1g64370 unknown protein O.I. H.G. S.X.
0.39 45.6 Zm.6787.1.A1_a_at At2g37620 hypothetical protein LOC100274407 /// UMP synthase - 2e-17 At3g54470 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) O.I. H.G. S.X.
0.38 44.2 Zm.15891.1.S1_at At2g37620 - - 1e-14 At5g23900 60S ribosomal protein L13 (RPL13D) O.I. H.G. S.X.
0.34 37.2 Zm.4409.1.A1_at At2g37620 hypothetical protein LOC100194336 - 8e+0 At3g58100 PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5) O.I. H.G. S.X.
0.34 37.2 Zm.17310.1.A1_at At2g37620 - - 7e+0 At5g42000 ORMDL family protein O.I. H.G. S.X.
0.34 37.2 Zm.6785.1.A1_a_at At2g37620 S-adenosylmethionine decarboxylase proenzyme - 3e-1 At3g02468 CPuORF9 (Conserved peptide upstream open reading frame 9) O.I. H.G. S.X.
0.30 29.8 Zm.14476.1.A1_a_at At2g37620 protein disulfide isomerase /// protein disulfide isomerase - 1e-3 At5g60640 ATPDIL1-4 (PDI-LIKE 1-4) O.I. H.G. S.X.
0.30 29.8 Zm.4078.1.A1_at At2g37620 protein kinase APK1A - 6e-16 At3g01300 protein kinase, putative O.I. H.G. S.X.
0.28 28.1 Zm.2979.1.S1_at At2g37620 trafficking protein particle complex protein 2 - 2e-12 At1g80500 - O.I. H.G. S.X.
0.22 16.9 Zm.7176.1.A1_at At2g37620 - - 5e+0 At5g05210 nucleolar matrix protein-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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