CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.1913.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g37620: ACT1 (ACTIN 1) (HF=0)

Module size 6 genes

NF 0.82

%ile 98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.97 Gma.1913.1.S1_at BI970928 - - 0 At2g37620 ACT1 (ACTIN 1) O.I. H.G. S.X.
0.83 92.5 0.97 Gma.1324.1.S1_at BE658235 - - 1e-131 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) O.I. H.G. S.X.
0.80 91.5 0.97 Gma.7774.1.S1_at CD401719 - - 1e-26 At3g10540 3-phosphoinositide-dependent protein kinase, putative O.I. H.G. S.X.
0.80 91.5 0.98 Gma.15367.1.S1_at CD412241 - - 7e-60 At3g59910 - O.I. H.G. S.X.
0.67 86.1 0.98 Gma.2135.1.S1_a_at BE660424 - - 7e-1 At3g26400 EIF4B1 O.I. H.G. S.X.
0.59 79.5 0.97 Gma.10004.1.S1_at BF070937 - - 6e-25 At5g36290 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.3 99.8 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.4 99.8 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.8 99.8 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the rice gene, Os03g0718100, orthologous to the query gene, Gma.1913.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 Os03g0718100 At2g37620 - Actin 1 0 At3g12110 ACT11 (actin-11) O.I. H.G. S.X.
0.56 76.3 Os01g0685800 At2g37620 - ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14) 6e-156 At5g08680 ATP synthase beta chain, mitochondrial, putative O.I. H.G. S.X.
0.55 73.7 Os05g0400400 At2g37620 - Ubiquinol-cytochrome C reductase complex 8.0 kDaprotein (EC 1.10.2.2) 3e-1 At4g19740 catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds O.I. H.G. S.X.
0.55 73.7 Os03g0606200 At2g37620 - Conserved hypothetical protein 1e-21 At3g46430 unknown protein O.I. H.G. S.X.
0.53 71.3 Os07g0495200 At2g37620 - ATP synthase delta' chain, mitochondrial precursor(EC 3.6.3.14) 1e-1 At5g47030 ATP synthase delta' chain, mitochondrial O.I. H.G. S.X.
0.44 58.1 Os05g0553000 At2g37620 - ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14) 0 At5g08670 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism O.I. H.G. S.X.
0.40 51.1 Os12g0169700 At2g37620 - Ferripyochelin-binding protein-like 8e-16 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.40 51.1 Os05g0301700 At2g37620 - Cytochrome c1 (Fragment) 5e-79 At3g27240 cytochrome c1, putative O.I. H.G. S.X.
0.39 48.3 Os03g0581800 At2g37620 - Hypothetical protein 2e-2 At2g20820 unknown protein O.I. H.G. S.X.
0.36 44.0 Os04g0486600 At2g37620 - Glyceraldehyde-3-phosphate dehydrogenase,cytosolic 3 (EC 1.2.1.12) 2e+0 At1g09220 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.32 36.3 Os03g0129900 At2g37620 - NADH-ubiquinone oxidoreductase B18 subunit familyprotein 1e+0 At4g26820 - O.I. H.G. S.X.
0.29 31.1 Os07g0223400 At2g37620 - ADP-ribosylation factor 2e-123 At2g47170 ARF1A1C O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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