CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.1913.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g37620: ACT1 (ACTIN 1) (HF=0)

Module size 6 genes

NF 0.82

%ile 98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.97 Gma.1913.1.S1_at BI970928 - - 0 At2g37620 ACT1 (ACTIN 1) O.I. H.G. S.X.
0.83 92.5 0.97 Gma.1324.1.S1_at BE658235 - - 1e-131 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) O.I. H.G. S.X.
0.80 91.5 0.97 Gma.7774.1.S1_at CD401719 - - 1e-26 At3g10540 3-phosphoinositide-dependent protein kinase, putative O.I. H.G. S.X.
0.80 91.5 0.98 Gma.15367.1.S1_at CD412241 - - 7e-60 At3g59910 - O.I. H.G. S.X.
0.67 86.1 0.98 Gma.2135.1.S1_a_at BE660424 - - 7e-1 At3g26400 EIF4B1 O.I. H.G. S.X.
0.59 79.5 0.97 Gma.10004.1.S1_at BF070937 - - 6e-25 At5g36290 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.3 99.8 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.4 99.8 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.8 99.8 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g37620, orthologous to the query gene, Gma.1913.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.25 22.6 At2g37620 818339 ACT1 (ACTIN 1) Member of the actin gene family. Expressed in mature pollen. O.I. H.G. S.X.
0.67 81.6 At1g15470 838117 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. H.G. S.X.
0.55 70.6 At1g14560 838018 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPO O.I. H.G. S.X.
0.55 70.6 At3g55050 824671 serine/threonine protein phosphatase 2C (PP2C6) F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFB O.I. H.G. S.X.
0.31 33.8 At2g17530 816260 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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