Co-expression analysis

Gene ID Gma.1913.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g37620: ACT1 (ACTIN 1) (HF=0)
Module size 6 genes
NF 0.82
%ile 98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.97Gma.1913.1.S1_atBI970928--0At2g37620ACT1 (ACTIN 1)O.I.H.G.S.X.
0.8392.50.97Gma.1324.1.S1_atBE658235--1e-131At4g35950ARAC6 (ARABIDOPSIS RAC-LIKE 6)O.I.H.G.S.X.
0.8091.50.97Gma.7774.1.S1_atCD401719--1e-26At3g105403-phosphoinositide-dependent protein kinase, putativeO.I.H.G.S.X.
0.5979.50.97Gma.10004.1.S1_atBF070937--6e-25At5g36290unknown proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.399.8GSM308559Mature Soybean (Glycine max) pollen grains Replicate 2GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
28.499.8GSM308560Mature Soybean (Glycine max) pollen grains Replicate 3GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
25.899.8GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g37620, orthologous to the query gene, Gma.1913.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2522.6At2g37620818339ACT1 (ACTIN 1)Member of the actin gene family. Expressed in mature pollen.O.I.H.G.S.X.
0.6781.6At1g15470838117transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.H.G.S.X.
0.5570.6At1g14560838018mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOO.I.H.G.S.X.
0.5570.6At3g55050824671serine/threonine protein phosphatase 2C (PP2C6)F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBO.I.H.G.S.X.
0.3133.8At2g17530816260protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage