Co-expression analysis

Gene ID	Gma.1880.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g25890: IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) (HF=3e+0)
Module size	6 genes
NF	0.77
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.99	Gma.1880.2.S1_at	AW704809	-	-	3e+0	At5g25890	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	O.I.	H.G.	S.X.	Please select
0.91	98.6	0.99	GmaAffx.73695.1.S1_at	AW471773	-	-	6e-9	At3g24650	ABI3 (ABA INSENSITIVE 3)	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.98	GmaAffx.67969.1.S1_at	AW395744	-	-	8e-2	At4g10020	AtHSD5 (hydroxysteroid dehydrogenase 5)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.98	GmaAffx.57612.1.S1_at	AW568460	-	-	1e+0	At3g43682	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.99	GmaAffx.84879.1.S1_at	AI735921	-	-	6e-15	At1g17810	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.16820.1.S1_s_at	X05652.1	glycinin A5A4B3 /// A5A4B3 subunits precursor (aa -23 to 539) /// glycinin	-	5e-3	At5g19260	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.3	99.7	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
17.1	99.7	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
17.1	99.7	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
16.6	99.6	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
15.9	99.6	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
15.8	99.6	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
15.5	99.6	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
15.3	99.6	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
14.7	99.6	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
14.3	99.6	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
14.2	99.6	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
14.1	99.6	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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