Co-expression analysis

Gene ID	Gma.1808.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g60800: NIK3 (NSP-INTERACTING KINASE 3) (HF=4e-54)
Module size	17 genes
NF	0.09
%ile	25.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	0.95	Gma.1808.1.S1_at	AW309911	-	-	4e-54	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.96	Gma.7341.1.A1_s_at	CA953350	-	-	3e-29	At2g22670	IAA8	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.96	GmaAffx.41905.1.S1_at	AW351001	-	-	2e+0	At4g16410	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.96	Gma.4597.1.S1_at	AW099840	-	-	6e-11	At4g21760	BGLU47 (Beta-glucosidase 47)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.97	Gma.5389.1.S1_at	BI968545	-	-	2e-4	At1g72160	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.97	Gma.13221.1.A1_at	BE819862	-	-	6e+0	At5g52140	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.97	Gma.6789.1.S1_at	BU544065	-	-	4e-7	At1g68920	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.97	Gma.13220.1.A1_at	CD396437	-	-	1e-12	At5g23550	-	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.97	GmaAffx.88740.1.S1_s_at	CK605984	-	-	2e-9	At1g26355	SP1L1 (SPIRAL1-LIKE1)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.97	GmaAffx.85865.1.S1_at	AW396826	-	-	2e-16	At3g27580	ATPK7	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.96	Gma.5674.1.S1_a_at	CA937173	-	-	4e-36	At3g58610	ketol-acid reductoisomerase	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.97	Gma.5932.1.S1_at	AW184998	-	-	5e-10	At5g48385	-	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.96	Gma.3534.1.S1_x_at	AW309517	-	-	7e-16	At1g48550	vacuolar protein sorting-associated protein 26 family protein / VPS26 family protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.96	Gma.5192.1.S1_at	CD410634	-	-	1e-14	At3g49350	RAB GTPase activator	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.97	GmaAffx.8636.1.S1_at	CD418162	-	-	6e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.96	Gma.8234.1.S1_at	BQ613075	-	-	1e-24	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.96	Gma.10878.1.S1_at	BE822379	-	-	3e+0	At5g13430	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	96.4	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.2	96.0	GSM184828	Whole Seed at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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