Co-expression analysis

Gene ID	Gma.17975.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g50530: CRK (CDPK-related kinase) (HF=2e-29)
Module size	6 genes
NF	0.25
%ile	49.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	0.95	Gma.17975.2.S1_at	BQ628976	-	-	2e-29	At3g50530	CRK (CDPK-related kinase)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.71343.1.S1_at	BE555273	-	-	1e-16	At5g38880	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.10528.1.S1_at	BM270365	-	-	6e-25	At1g71350	eukaryotic translation initiation factor SUI1 family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.96	Gma.6053.1.S1_at	CA852593	-	-	1e-23	At3g17330	ECT6 (evolutionarily conserved C-terminal region 6)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.98	GmaAffx.63439.1.S1_at	BQ628576	-	-	3e-34	At1g01510	AN (ANGUSTIFOLIA)	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	Gma.4932.1.S1_at	BI970670	NDX1 homeobox protein	-	2e-5	At4g03090	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	97.1	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.5	96.6	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.3	96.2	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.3	96.2	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.2	96.0	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.0	95.6	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.0	95.6	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the grape gene, 1610570_at, orthologous to the query gene, Gma.17975.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.5	1610570_at	At3g50530	hypothetical protein LOC100246879	-	2e-24	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	1610597_at	At3g50530	hypothetical protein LOC100251901	-	2e-9	At2g24100	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1606642_at	At3g50530	hypothetical protein LOC100257219	-	1e-3	At2g21620	RD2	O.I.	H.G.	S.X.	Please select
0.50	72.7	1612510_at	At3g50530	hypothetical protein LOC100250654	-	1e-10	At2g11520	CRCK3	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613560_at	At3g50530	hypothetical protein LOC100241749	-	4e-3	At5g24260	prolyl oligopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1617932_at	At3g50530	hypothetical protein LOC100260043	-	2e-43	At5g51570	band 7 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage