Co-expression analysis

Gene ID Gma.17975.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g50530: CRK (CDPK-related kinase) (HF=2e-29)
Module size 6 genes
NF 0.25
%ile 49.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8392.50.95Gma.17975.2.S1_atBQ628976--2e-29At3g50530CRK (CDPK-related kinase)O.I.H.G.S.X.
0.5071.70.97GmaAffx.71343.1.S1_atBE555273--1e-16At5g38880unknown proteinO.I.H.G.S.X.
0.3346.10.98Gma.10528.1.S1_atBM270365--6e-25At1g71350eukaryotic translation initiation factor SUI1 family proteinO.I.H.G.S.X.
0.1822.30.96Gma.6053.1.S1_atCA852593--1e-23At3g17330ECT6 (evolutionarily conserved C-terminal region 6)O.I.H.G.S.X.
0.1114.20.98GmaAffx.63439.1.S1_atBQ628576--3e-34At1g01510AN (ANGUSTIFOLIA)O.I.H.G.S.X.
0.1013.00.98Gma.4932.1.S1_atBI970670NDX1 homeobox protein-2e-5At4g03090sequence-specific DNA binding / transcription factorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.997.1GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.596.6GSM267287Axillary meristem from 10-day-old soybean seedlings GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.396.2GSM258504Soybean shoot apical meristem, 4 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.396.2GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.296.0GSM258499Soybean shoot apical meristem, 4 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.195.8GSM258503Soybean shoot apical meristem, 2 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.195.8GSM258497Soybean Shoot Apical Meristem, 1 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.195.8GSM267288Axillary meristem from 10-day-old soybean seedlings repliacte 2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.095.6GSM258498Soybean shoot apical meristem, 2 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.095.6GSM258496Vegetative soybean shoot apical meristemGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0619800, orthologous to the query gene, Gma.17975.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5676.3Os07g0619800At3g50530-CDPK-related protein kinase (EC 2.7.1.-) (PK421)8e-48At3g50530CRK (CDPK-related kinase)O.I.H.G.S.X.
0.4051.1Os02g0827600At3g50530-Conserved hypothetical protein1e-7At5g08400unknown proteinO.I.H.G.S.X.
0.3846.9Os05g0349700At3g50530-G4 protein (Chlorophyll synthetase)1e-36At3g51820G4O.I.H.G.S.X.
0.3338.8Os03g0411500At3g50530-Peptidase S14, ClpP family protein7e-13At1g11750CLPP6O.I.H.G.S.X.
0.2931.1Os03g0395000At3g50530-Heme oxygenase 2 (Fragment)9e-4At5g28300trihelix DNA-binding protein, putativeO.I.H.G.S.X.
0.2321.2Os08g0344600At3g50530-Phosphate/phosphoenolpyruvate translocator6e-14At5g33320CUE1 (CAB UNDEREXPRESSED 1)O.I.H.G.S.X.
0.2117.9Os01g0268300At3g50530-DNA gyrase subunit B2e-64At5g04130DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putativeO.I.H.G.S.X.
0.127.2Os03g0363400At3g50530-Protein of unknown function UPF0153 family protein1e-2At5g02710unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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