Co-expression analysis

Gene ID	Gma.17975.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g50530: CRK (CDPK-related kinase) (HF=2e-29)
Module size	6 genes
NF	0.25
%ile	49.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	0.95	Gma.17975.2.S1_at	BQ628976	-	-	2e-29	At3g50530	CRK (CDPK-related kinase)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.71343.1.S1_at	BE555273	-	-	1e-16	At5g38880	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.10528.1.S1_at	BM270365	-	-	6e-25	At1g71350	eukaryotic translation initiation factor SUI1 family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.96	Gma.6053.1.S1_at	CA852593	-	-	1e-23	At3g17330	ECT6 (evolutionarily conserved C-terminal region 6)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.98	GmaAffx.63439.1.S1_at	BQ628576	-	-	3e-34	At1g01510	AN (ANGUSTIFOLIA)	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	Gma.4932.1.S1_at	BI970670	NDX1 homeobox protein	-	2e-5	At4g03090	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	97.1	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.5	96.6	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.3	96.2	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.3	96.2	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.2	96.0	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.0	95.6	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.0	95.6	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the barley gene, Contig16466_at, orthologous to the query gene, Gma.17975.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.7	Contig16466_at	At3g50530	-	-	4e-15	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig19283_at	At3g50530	-	-	2e+1	Atmg00840	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig4789_at	At3g50530	-	-	1e-14	At5g42790	PAF1	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig16432_at	At3g50530	-	-	1e-2	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig8893_at	At3g50530	-	-	2e-14	At5g61970	signal recognition particle-related / SRP-related	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig12784_at	At3g50530	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig11977_at	At3g50530	-	-	6e-1	At5g62490	ATHVA22B	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig14607_at	At3g50530	-	-	2e+0	At4g37440	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig20845_at	At3g50530	-	-	5e+0	At5g28360	ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig20343_at	At3g50530	-	-	3e-1	At2g20805	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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