Co-expression analysis

Gene ID	Gma.17719.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g78870: UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) (HF=2e-68)
Module size	7 genes
NF	0.54
%ile	85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	78.8	0.98	Gma.17719.1.S1_at	AI960464	-	-	2e-68	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.10799.1.S1_at	BG237181	-	-	4e-96	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.15565.1.S1_at	BG155315	-	-	3e-30	At4g10590	ubiquitin carboxyl-terminal hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.15307.1.S1_at	BM307140	-	-	9e-44	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.6150.2.S1_x_at	CD416056	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.10026.1.S1_at	BQ628569	-	-	3e-19	At5g43010	RPT4A	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.2259.1.S1_at	CD392275	-	-	3e-83	At1g16470	PAB1 (PROTEASOME SUBUNIT PAB1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	98.6	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.6	98.3	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.1	98.1	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.0	98.0	GSM201127	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.8	97.9	GSM191081	Soybean_Cotyledon_EN1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.7	97.8	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.5	97.7	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.5	97.7	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.4	97.6	GSM191082	Soybean_Cotyledon_EN2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.3	97.5	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.2	97.4	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.2	97.4	GSM201126	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.2	97.4	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.2	97.4	GSM147952	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.1	97.3	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM182043	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.9	97.1	GSM182038	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.9	97.1	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.9	97.1	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.8	97.0	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM182037	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.8	97.0	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM147943	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.6	96.7	GSM147941	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.5	96.6	GSM191083	Soybean_Cotyledon_EPD1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.5	96.6	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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