Co-expression analysis

Gene ID	Gma.17344.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g33040: ATP synthase gamma chain, mitochondrial (ATPC) (HF=7e-41)
Module size	7 genes
NF	0.57
%ile	87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	50.8	0.99	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.98	Gma.732.1.A1_at	AW309355	-	-	4e-7	At4g07390	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.99	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.8460.1.S1_at	AF404404.1	acyl-CoA oxidase	-	7e-39	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.99	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the barley gene, Contig2722_at, orthologous to the query gene, Gma.17344.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	Contig2722_at	At2g33040	-	-	2e-32	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig1326_s_at	At2g33040	-	-	7e-2	At1g22885	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig333_M_at	At2g33040	-	-				O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig24431_at	At2g33040	-	-	4e+0	At1g11475	NRPB10	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig10570_at	At2g33040	-	-	6e-8	At4g38250	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig7314_at	At2g33040	-	-	5e-3	At1g76970	VHS domain-containing protein / GAT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig3645_at	At2g33040	-	-	7e-9	At5g55850	NOI	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig8444_at	At2g33040	-	-	3e-6	At2g28250	NCRK	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig20398_at	At2g33040	-	-	8e-3	At2g42620	MAX2 (MORE AXILLARY BRANCHES 2)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig23393_at	At2g33040	-	-	3e-1	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	HA11F23u_at	At2g33040	-	-	1e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig6423_at	At2g33040	-	-	1e-3	At2g34040	apoptosis inhibitory 5 (API5) family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig3361_at	At2g33040	-	-	8e-4	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig8766_at	At2g33040	-	-	8e-7	At4g12130	aminomethyltransferase	O.I.	H.G.	S.X.	Please select
0.15	14.1	HU09N18u_s_at	At2g33040	-	-	2e+0	At1g09370	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig10647_at	At2g33040	-	-	2e-46	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	HVSMEm0005B12r2_at	At2g33040	-	-	3e-1	At3g23727	SCRL12 (SCR-Like 12)	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig16119_at	At2g33040	-	-	8e+0	Atcg01060	-	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig23773_at	At2g33040	-	-	1e+0	At5g14070	ROXY2	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig13216_at	At2g33040	-	-	1e-5	At3g12620	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig13674_at	At2g33040	-	-	2e+0	At5g17073	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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