CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.17344.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g33040: ATP synthase gamma chain, mitochondrial (ATPC) (HF=7e-41)

Module size 7 genes

NF 0.57

%ile 87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.36 50.8 0.99 Gma.17344.1.S1_at CD409198 - - 7e-41 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) O.I. H.G. S.X.
0.83 92.5 0.98 Gma.732.1.A1_at AW309355 - - 4e-7 At4g07390 PQ-loop repeat family protein / transmembrane family protein O.I. H.G. S.X.
0.67 86.1 0.98 GmaAffx.92974.1.S1_s_at CF808699 - - 8e-2 At3g17780 unknown protein O.I. H.G. S.X.
0.63 82.9 0.99 Gma.4035.1.S1_at BQ453456 - - 1e-38 At5g11560 catalytic O.I. H.G. S.X.
0.61 81.8 0.98 Gma.8460.1.S1_at AF404404.1 acyl-CoA oxidase - 7e-39 At4g16760 ACX1 (ACYL-COA OXIDASE 1) O.I. H.G. S.X.
0.48 67.7 0.99 Gma.448.2.S1_a_at BM091754 - - 3e-21 At3g60820 PBF1 O.I. H.G. S.X.
0.44 63.3 0.98 Gma.5368.1.S1_at BQ627877 - - 2e-30 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 95.6 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g33040, orthologous to the query gene, Gma.17344.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.82 90.9 At2g33040 817866 ATP synthase gamma chain, mitochondrial (ATPC) F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA O.I. H.G. S.X.
0.83 91.4 At5g67590 836895 FRO1 (FROSTBITE1) Mutant leaves have a reduced capacity for cold acclimation, appear water-soaked, leak electrolytes, and accumulate reactive oxygen species constitutively. Encode a protein with high similarity to the 18-kD Fe-S subunit of complex I (NADH dehydrogenase, EC 1.6.5.3) in the mitochondrial electron transfer chain. O.I. H.G. S.X.
0.67 81.6 At1g16700 838239 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative F:NADH dehydrogenase (ubiquinone) activity, metal ion binding;P:unknown;C:mitochondrion, respiratory chain complex I;BOAPMF O.I. H.G. S.X.
0.67 81.6 At4g29480 829069 mitochondrial ATP synthase g subunit family protein F:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrion;PO O.I. H.G. S.X.
0.67 81.6 At5g47570 834807 unknown protein F:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;PO O.I. H.G. S.X.
0.58 73.8 At5g52840 835361 NADH-ubiquinone oxidoreductase-related F:oxidoreductase activity, acting on NADH or NADPH;P:photorespiration;C:mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I, membrane;MFPO O.I. H.G. S.X.
0.55 70.6 At4g34700 829622 complex 1 family protein / LVR family protein F:catalytic activity;P:photorespiration;C:mitochondrial membrane, plasma membrane, respiratory chain complex I;MFPO O.I. H.G. S.X.
0.40 50.8 At4g32470 829382 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane;MPFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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