Co-expression analysis

Gene ID	Gma.17002.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g03320: tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) (HF=8e-3)
Module size	6 genes
NF	0.01
%ile	3.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	60.6	0.86	Gma.17002.1.A1_at	BE820455	-	-	8e-3	At4g03320	tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.86	Gma.8908.1.S1_at	BU761340	-	-	8e+0	At2g21160	translocon-associated protein alpha (TRAP alpha) family protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.86	GmaAffx.1097.1.A1_at	BE657914	-	-	5e-1	At2g04910	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
-	1.4	0.87	Gma.7405.1.A1_at	BU547481	-	-	8e-11	At2g38060	PHT4	O.I.	H.G.	S.X.	Please select
-	1.4	0.86	Gma.725.1.S1_at	CA803003	-	-	7e-14	At4g36190	serine-type peptidase	O.I.	H.G.	S.X.	Please select
-	1.4	0.86	Gma.14080.1.A1_at	BI321141	-	-	4e-13	At3g13100	ATMRP7	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.3	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
10.6	99.3	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.9	99.0	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.6	98.9	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.1	98.8	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.1	98.8	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.7	98.4	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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