Co-expression analysis

Gene ID	Gma.170.1.S1_at
Gene name	seed maturation protein PM22
Homology with Arabidopsis	Similar to At1g01470: LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) (HF=2e-2)
Module size	7 genes
NF	0.40
%ile	69.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.3	0.83	Gma.170.1.S1_at	AF115314.1	seed maturation protein PM22	-	2e-2	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.86	GmaAffx.63115.1.A1_at	BE823736	-	-	3e+0	At3g09470	-	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.73	GmaAffx.24413.1.A1_at	BU548368	-	-	6e+0	Atmg00030	-	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.90	Gma.1495.1.S1_at	BI973545	-	-	8e-1	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.87	Gma.15695.1.A1_at	BE022791	-	-	2e-6	At5g47810	PFK2 (PHOSPHOFRUCTOKINASE 2)	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.88	Gma.2923.1.S1_at	BM269823	-	-	1e-7	At1g48130	ATPER1	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.89	GmaAffx.22172.1.S1_at	BE824307	-	-	1e-1	At3g18960	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.0	99.7	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
17.5	99.7	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
16.0	99.6	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
15.7	99.6	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
12.8	99.5	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
12.8	99.5	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
12.8	99.5	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
12.7	99.5	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
10.9	99.4	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
10.8	99.4	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
9.0	99.2	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.8	99.1	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.6	99.1	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.5	98.7	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.4	97.6	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.3	97.5	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.3	96.2	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.1	95.8	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM201101	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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