Co-expression analysis

Gene ID	Gma.1689.1.S1_s_at
Gene name	6-phosphogluconate dehydrogenase
Homology with Arabidopsis	Similar to At3g02360: 6-phosphogluconate dehydrogenase family protein (HF=1e-114)
Module size	6 genes
NF	0.63
%ile	91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.35	48.6	0.97	Gma.1689.1.S1_s_at	AB007907.1	6-phosphogluconate dehydrogenase	-	1e-114	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.98	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.97	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.15840.1.S1_s_at, orthologous to the query gene, Gma.1689.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.15840.1.S1_s_at	At3g02360	hypothetical protein	-	6e-73	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.5393.1.S1_s_at	At3g02360	hypothetical protein	-	1e-84	At4g38510	vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.2004.1.A1_at	At3g02360	-	-	4e-42	At3g13930	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.450.1.S1_at	At3g02360	hypothetical protein	-	2e-72	At5g50850	MAB1 (MACCI-BOU)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.4942.2.S1_s_at	At3g02360	hypothetical protein	-	1e-11	At2g21160	translocon-associated protein alpha (TRAP alpha) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.212038.1.S1_s_at	At3g02360	hypothetical protein	-	1e-153	At2g20420	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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