CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.1689.1.S1_s_at

Gene name 6-phosphogluconate dehydrogenase
Homology with Arabidopsis Similar to At3g02360: 6-phosphogluconate dehydrogenase family protein (HF=1e-114)

Module size 6 genes

NF 0.63

%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.35 48.6 0.97 Gma.1689.1.S1_s_at AB007907.1 6-phosphogluconate dehydrogenase - 1e-114 At3g02360 6-phosphogluconate dehydrogenase family protein O.I. H.G. S.X.
0.83 92.5 0.98 Gma.3107.1.S1_at BE658900 - - 1e-97 At5g62790 DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) O.I. H.G. S.X.
0.73 88.9 0.97 Gma.6602.2.S1_s_at BI320883 - - 4e-103 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) O.I. H.G. S.X.
0.71 87.8 0.97 Gma.10455.1.S1_at BQ628953 - - 3e-8 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) O.I. H.G. S.X.
0.57 78.8 0.98 GmaAffx.90026.1.S1_s_at CF805751 - - 5e-18 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.50 71.7 0.98 Gma.11238.1.S1_at BQ454110 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 95.6 GSM294047 96_3095.2F.R9F1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g02360, orthologous to the query gene, Gma.1689.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At3g02360 821163 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to salt stress;C:peroxisome;BOMPFAV O.I. H.G. S.X.
0.86 93.1 At1g22410 838847 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF O.I. H.G. S.X.
0.60 75.7 At1g48850 841307 EMB1144 (embryo defective 1144) F:chorismate synthase activity;P:embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process;C:nucleolus, chloroplast;OBAFPM O.I. H.G. S.X.
0.44 57.2 At4g34050 829551 caffeoyl-CoA 3-O-methyltransferase, putative F:caffeoyl-CoA O-methyltransferase activity;P:coumarin biosynthetic process, response to cadmium ion;C:cytosol;BOPMFA O.I. H.G. S.X.
0.43 55.3 At2g22250 816758 aminotransferase class I and II family protein F:L-aspartate:2-oxoglutarate aminotransferase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity;P:embryonic development ending in seed dormancy;C:chloroplast;BOPAMF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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