Co-expression analysis

Gene ID Gma.16711.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g48335: unknown protein (HF=1e-4)
Module size 8 genes
NF 0.63
%ile 91.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6080.70.98Gma.16711.2.S1_atAW201538--1e-4At5g48335unknown proteinO.I.H.G.S.X.
0.7589.50.98GmaAffx.22482.1.S1_atAW185059--1e-28At3g46460UBC13 (ubiquitin-conjugating enzyme 13)O.I.H.G.S.X.
0.6786.10.98Gma.11925.1.S1_atCF922804--3e-2At1g11530ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)O.I.H.G.S.X.
0.6181.80.98Gma.6454.1.S1_atBM271508--2e-90At5g25265unknown proteinO.I.H.G.S.X.
0.6181.80.98Gma.12428.1.S1_a_atBI426385--2e-28At4g25680unknown proteinO.I.H.G.S.X.
0.5374.20.98Gma.15087.1.S1_atBI968833--5e+0At1g01530AGL28 (AGAMOUS-LIKE 28)O.I.H.G.S.X.
0.5273.10.98Gma.10261.1.S1_atBG839311--2e-52At3g27090-O.I.H.G.S.X.
0.5071.70.99GmaAffx.22482.1.S1_x_atAW185059--1e-28At3g46460UBC13 (ubiquitin-conjugating enzyme 13)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.396.2GSM29217834-1006.1A.R003P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM2929178_C216.1L.R9L3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29289065_C202.1L.R9L1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage