Co-expression analysis

Gene ID	Gma.16711.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g48335: unknown protein (HF=1e-4)
Module size	8 genes
NF	0.63
%ile	91.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	80.7	0.98	Gma.16711.2.S1_at	AW201538	-	-	1e-4	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.98	GmaAffx.22482.1.S1_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.11925.1.S1_at	CF922804	-	-	3e-2	At1g11530	ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.6454.1.S1_at	BM271508	-	-	2e-90	At5g25265	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.12428.1.S1_a_at	BI426385	-	-	2e-28	At4g25680	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.15087.1.S1_at	BI968833	-	-	5e+0	At1g01530	AGL28 (AGAMOUS-LIKE 28)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.98	Gma.10261.1.S1_at	BG839311	-	-	2e-52	At3g27090	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	GmaAffx.22482.1.S1_x_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292917	8_C216.1L.R9L3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.7216.3.S1_s_at, orthologous to the query gene, Gma.16711.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	Ptp.7216.3.S1_s_at	At5g48335	hypothetical protein	-	3e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.55208.1.S1_at	At5g48335	hypothetical protein	-	4e-12	At2g36850	GSL8 (GLUCAN SYNTHASE-LIKE 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.116348.1.S1_s_at	At5g48335	hypothetical protein	-	4e-19	At3g02680	NBS1 (NIJMEGEN BREAKAGE SYNDROME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.100452.1.S1_at	At5g48335	hypothetical protein	-	1e-7	At1g68310	vacuolar sorting signal binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.131450.1.S1_at	At5g48335	hypothetical protein	-	1e-32	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.2585.1.S1_at	At5g48335	hypothetical protein	-	4e-15	At5g05100	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.131693.1.S1_at	At5g48335	hypothetical protein	-	4e-50	At2g29190	APUM2 (Arabidopsis Pumilio 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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