Co-expression analysis

Gene ID	Gma.16711.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g48335: unknown protein (HF=1e-4)
Module size	8 genes
NF	0.63
%ile	91.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	80.7	0.98	Gma.16711.2.S1_at	AW201538	-	-	1e-4	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.98	GmaAffx.22482.1.S1_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.11925.1.S1_at	CF922804	-	-	3e-2	At1g11530	ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.6454.1.S1_at	BM271508	-	-	2e-90	At5g25265	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.12428.1.S1_a_at	BI426385	-	-	2e-28	At4g25680	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.15087.1.S1_at	BI968833	-	-	5e+0	At1g01530	AGL28 (AGAMOUS-LIKE 28)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.98	Gma.10261.1.S1_at	BG839311	-	-	2e-52	At3g27090	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	GmaAffx.22482.1.S1_x_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292917	8_C216.1L.R9L3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, AF052395_at, orthologous to the query gene, Gma.16711.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	AF052395_at	At5g48335	-	-	1e+0	At5g56600	PRF3 (PROFILIN 3)	O.I.	H.G.	S.X.	Please select
0.86	94.8	Contig26518_at	At5g48335	-	-	2e+0	At2g46160	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig17507_at	At5g48335	-	-	2e+0	At3g05350	aminopeptidase/ hydrolase	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig17064_s_at	At5g48335	-	-	4e+0	At1g05760	RTM1 (restricted tev movement 1)	O.I.	H.G.	S.X.	Please select
0.80	92.5	U34198_at	At5g48335	-	-	1e-12	At5g60770	ATNRT2.4	O.I.	H.G.	S.X.	Please select
0.77	90.8	HR01H14u_at	At5g48335	-	-	8e-1	At1g30750	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig22732_at	At5g48335	-	-	1e-2	At1g73885	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig25246_at	At5g48335	-	-	3e+0	At2g33690	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	HW05L10u_at	At5g48335	-	-	4e+0	At2g16210	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig13817_s_at	At5g48335	-	-	4e-14	At1g54160	NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)	O.I.	H.G.	S.X.	Please select
0.48	63.2	HVSMEg0015I17f_at	At5g48335	-	-	4e-1	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig15931_at	At5g48335	-	-	1e+0	At3g12080	emb2738 (embryo defective 2738)	O.I.	H.G.	S.X.	Please select
0.42	55.2	EBro08_SQ007_J24_at	At5g48335	-	-	4e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig23608_at	At5g48335	-	-	8e-8	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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