CoP: Co-expressed Biological Processes

Co-expression analysis

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	86.1	0.98	Gma.16388.1.S1_at	CD403252	-	-	1e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.
0.50	71.7	0.98	GmaAffx.90801.1.S1_at	CF805999	-	-	3e-119	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.
0.48	67.7	0.98	Gma.6263.1.S1_at	AW311303	-	-	2e-112	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	O.I.	H.G.	S.X.
0.46	65.5	0.98	Gma.17053.3.S1_x_at	CA783832	Cultivar JS385 glyceraldehyde 3-phosphate dehydrogenase	-	3e-45	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	O.I.	H.G.	S.X.
0.43	60.6	0.98	GmaAffx.92984.1.S1_s_at	CF808141	Calmodulin (SCaM-3)	-	2e-1	At3g08610	unknown protein	O.I.	H.G.	S.X.
0.37	51.7	0.98	Gma.7397.1.S1_at	BI970483	-	-	2e-3	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.
0.32	43.7	0.98	Gma.17053.3.S1_at	CA783832	Cultivar JS385 glyceraldehyde 3-phosphate dehydrogenase	-	3e-45	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	O.I.	H.G.	S.X.
0.27	35.7	0.98	GmaAffx.89835.1.S1_s_at	CK606588	-	-	8e-38	At3g62790	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.8	GSM201109	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.3	96.2	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Gene ID	Gma.16388.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g19580: GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) (HF=1e-42)
Module size	8 genes
NF	0.41
%ile	71.6