Co-expression analysis

Gene ID	Gma.16382.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g20930: - (HF=2e-61)
Module size	11 genes
NF	0.47
%ile	77.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	80.7	0.98	Gma.16382.1.S1_at	AW317554	-	-	2e-61	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.98	Gma.4016.1.S1_at	BQ453912	-	-	6e-9	At4g30480	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	Gma.10966.1.S1_at	CD396963	-	-	8e-130	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.98	GmaAffx.5401.1.S1_s_at	BM732974	-	-	2e-1	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.98	GmaAffx.10026.1.S1_at	BQ628569	-	-	3e-19	At5g43010	RPT4A	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.10799.1.S1_at	BG237181	-	-	4e-96	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.17539.1.S1_at	AF034572.1	proteasome IOTA subunit	-	2e-87	At2g05840	PAA2 (20S PROTEASOME SUBUNIT PAA2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.1793.1.S1_x_at	AW349902	-	-	4e-2	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.2259.1.S1_at	CD392275	-	-	3e-83	At1g16470	PAB1 (PROTEASOME SUBUNIT PAB1)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.17906.1.S1_s_at	BI702059	-	-	2e-11	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.16923.1.A1_s_at	AI443575	-	-	5e-5	At2g46505	SDH4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.6	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.2	98.6	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.7	98.4	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.6	98.3	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.3	98.2	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.9	98.0	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.8	97.9	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.8	97.9	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.8	97.9	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.7	97.8	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.7	97.8	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.5	97.7	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.4	97.6	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.4	97.6	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.2	97.4	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.2	97.4	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM191091	Soybean_Cotyledon_SEED1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.1	97.3	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.0	97.2	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.9	97.1	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.9	97.1	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.9	97.1	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.7	96.8	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.6	96.7	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.5	96.6	GSM182048	Whole Seed at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.5	96.6	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.4	96.4	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.3	96.2	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.2	96.0	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage