Co-expression analysis

Gene ID Gma.15971.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g18170: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (HF=3e-2)
Module size 18 genes
NF 0.24
%ile 48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9499.20.93Gma.15971.1.S1_atCD403261--3e-2At1g18170immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.3650.80.97Gma.6519.1.S1_s_atBE659156--1e+0At5g37730unknown proteinO.I.H.G.S.X.
0.3142.20.97Gma.2478.1.S1_atCF921737--8e-18At5g48580FKBP15-2O.I.H.G.S.X.
0.3040.40.98Gma.7413.1.S1_atBI970444--3e-2At2g06025GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.2839.00.97Gma.7979.1.S1_atBQ612325--8e-10At4g39690unknown proteinO.I.H.G.S.X.
0.2839.00.98Gma.10774.1.S1_s_atAW349966--2e-3At2g3760060S ribosomal protein L36 (RPL36A)O.I.H.G.S.X.
0.2735.70.97Gma.10924.1.S1_atBE820846--1e-44At3g62840-O.I.H.G.S.X.
0.2228.10.98GmaAffx.3745.1.A1_s_atBE824211--1e-2At2g39960microsomal signal peptidase 25 kDa subunit, putative (SPC25)O.I.H.G.S.X.
0.2228.10.97Gma.12296.1.S1_atCD399672--3e-1At4g37940AGL21O.I.H.G.S.X.
0.2228.10.98GmaAffx.83613.1.S1_atBU761975--4e-9At2g36930zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2025.10.98Gma.11169.1.S1_x_atBI702093--8e-85At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.1923.70.96Gma.11900.1.A1_s_atCD410294--1e-12At4g15840protein bindingO.I.H.G.S.X.
0.1822.30.97Gma.2341.1.S1_atBQ610161--3e-80At4g31480coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeO.I.H.G.S.X.
0.1822.30.98Gma.2259.1.S1_atCD392275--3e-83At1g16470PAB1 (PROTEASOME SUBUNIT PAB1)O.I.H.G.S.X.
0.1721.20.98Gma.9829.2.S1_x_atAI748648--7e-75At3g0920060S acidic ribosomal protein P0 (RPP0B)O.I.H.G.S.X.
0.1619.70.98Gma.584.1.S1_atCD402664--5e-47At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.
0.1619.70.97Gma.17299.1.S1_atCA802777--3e-24At1g47640unknown proteinO.I.H.G.S.X.
0.1215.10.98Gma.11021.1.S1_atCD401781--3e-33At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.7GSM191080Soybean_Cotyledon_ES2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
6.798.7GSM191079Soybean_Cotyledon_ES1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
6.798.7GSM182036Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
6.198.5GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.198.1GSM147939Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.797.8GSM147933Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.797.8GSM147940Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.197.3GSM182030Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.097.2GSM182029Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.097.2GSM182035Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.097.2GSM147934Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.997.1GSM201119Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.997.1GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.796.8GSM237069Soy_shoot apical meristem2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.796.8GSM267288Axillary meristem from 10-day-old soybean seedlings repliacte 2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.696.7GSM182031Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.496.4GSM182033Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.396.2GSM191076Soybean_Cotyledon_EP2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.396.2GSM191075Soybean_Cotyledon_EP1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.296.0GSM147941Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.296.0GSM267287Axillary meristem from 10-day-old soybean seedlings GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.195.8GSM182034Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.195.8GSM191091Soybean_Cotyledon_SEED1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.195.8GSM201102Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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