Co-expression analysis

Gene ID Gma.15578.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g53550: YSL3 (YELLOW STRIPE LIKE 3) (HF=2e-15)
Module size 16 genes
NF 0.23
%ile 47.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9499.20.96Gma.15578.1.S1_atCD414652--2e-15At5g53550YSL3 (YELLOW STRIPE LIKE 3)O.I.H.G.S.X.
0.3447.20.97Gma.6914.1.A1_atBG155750--4e+0At5g64590unknown proteinO.I.H.G.S.X.
0.3346.10.98Gma.7199.1.S1_atAI443555--7e-56At4g29490aminopeptidase/ manganese ion bindingO.I.H.G.S.X.
0.3040.40.97Gma.15598.1.S1_atCD407911--4e+0At5g65400unknown proteinO.I.H.G.S.X.
0.2633.90.97Gma.6744.1.S1_atBE657556--2e-53At4g38040exostosin family proteinO.I.H.G.S.X.
0.2430.90.97Gma.932.1.S1_atBE823341--3e-7At3g01910SOX (SULFITE OXIDASE)O.I.H.G.S.X.
0.2430.90.98Gma.4754.1.S1_atCD394174--1e-20At5g19150carbohydrate kinase familyO.I.H.G.S.X.
0.2126.60.97GmaAffx.41769.1.S1_atBE657452--1e-17At1g19140-O.I.H.G.S.X.
0.1721.20.98GmaAffx.89071.1.S1_s_atCK605653--2e-36At1g26550peptidyl-prolyl cis-trans isomerase PPIC-type family proteinO.I.H.G.S.X.
0.1518.70.98GmaAffx.51675.1.A1_atBU546652--8e-5At2g39805integral membrane Yip1 family proteinO.I.H.G.S.X.
0.1417.50.98Gma.6113.1.S1_atAW310349--3e-30At4g02080ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)O.I.H.G.S.X.
0.1417.50.98Gma.16339.1.S1_atBI968437--2e+0At4g01245-O.I.H.G.S.X.
0.1316.30.98Gma.10711.1.S1_a_atCD395888--2e+0At5g27440unknown proteinO.I.H.G.S.X.
0.1316.30.98Gma.4905.1.S1_a_atAW348478--1e-79At3g20800rcd1-like cell differentiation protein, putativeO.I.H.G.S.X.
0.1013.00.98Gma.14419.1.S1_atCD402292--4e-4At3g06040ribosomal protein L12 family proteinO.I.H.G.S.X.
0.0912.00.97Gma.4388.1.S1_a_atAI960115--2e-104At1g63770peptidase M1 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.898.4GSM309557storage protein suppression expt, RNAi biol rep1, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
5.798.4GSM309530storage protein suppression expt, RNAi biol rep2, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
5.798.4GSM309529storage protein suppression expt, RNAi biol rep1, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
5.498.2GSM309531storage protein suppression expt, RNAi biol rep2, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
5.398.2GSM309344transgenic RNAiOleosin, biol rep 1, tech rep 2GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
5.398.2GSM309343transgenic RNAiOleosin, biol rep 1, tech rep 1GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
5.098.0GSM309345transgenic RNAiOleosin, biol rep 2, tech rep 1GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
5.098.0GSM309528storage protein suppression expt, control tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
4.998.0GSM309527storage protein suppression expt, control tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
4.897.9GSM309342Wild type 2GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
4.897.9GSM309341Wild type 1GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
4.797.8GSM309346transgenic RNAiOleosin, biol rep 2, tech rep 2GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
3.195.8GSM201129Whole Seed at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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