Co-expression analysis

Gene ID	Gma.1520.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g27810: unknown protein (HF=3e+0)
Module size	10 genes
NF	0.43
%ile	73.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.9	0.94	Gma.1520.1.S1_at	BM527862	-	-	3e+0	At4g27810	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.95	GmaAffx.20415.1.A1_at	CD411104	-	-	3e+0	At5g18250	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.94	Gma.15705.1.S1_at	BI971354	-	-	2e-19	At1g18450	ATARP4	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.94	Gma.15509.2.A1_at	CD398971	-	-	7e-1	At4g09012	-	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.95	Gma.12359.1.S1_at	AW309567	-	-	4e+0	At5g66370	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.96	Gma.6467.2.A1_at	CD412680	MSI1	-	2e-11	At5g58230	MSI1 (MULTICOPY SUPRESSOR OF IRA1)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.95	Gma.7748.1.S1_at	BI969403	-	-	9e-6	At3g60360	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.95	GmaAffx.38078.1.S1_at	CD405216	-	-	4e-4	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.95	GmaAffx.47099.1.A1_at	BU546980	-	-	3e-1	At2g19820	LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.95	GmaAffx.23435.1.S1_at	AW349191	-	-	3e+0	At4g24930	thylakoid lumenal 17.9 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.2	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
9.1	99.2	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
8.6	99.1	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.9	99.0	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.8	99.0	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.6	98.9	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.3	98.9	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.2	98.9	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.1	98.8	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.1	98.8	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.8	98.7	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.7	98.7	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.6	98.7	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.6	98.7	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.6	98.7	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.5	98.7	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.4	98.6	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.4	98.6	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.3	98.6	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.3	98.6	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.1	98.5	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.1	98.5	GSM191083	Soybean_Cotyledon_EPD1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.0	98.5	GSM191085	Soybean_Cotyledon_HI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.9	98.5	GSM147954	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.9	98.5	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.8	98.4	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.8	98.4	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.7	98.4	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.7	98.4	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.6	98.3	GSM147955	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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