Co-expression analysis

Gene ID Gma.1479.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g19120: ERD3 (early-responsive to dehydration 3) (HF=6e-21)
Module size 6 genes
NF 0.17
%ile 38.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.97Gma.1479.2.S1_atAW279120--6e-21At4g19120ERD3 (early-responsive to dehydration 3)O.I.H.G.S.X.
0.5071.70.97GmaAffx.65773.1.S1_atBI320311--2e-44At4g19120ERD3 (early-responsive to dehydration 3)O.I.H.G.S.X.
0.1518.70.99GmaAffx.27367.1.S1_atBG653618--7e-9At1g79690atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)O.I.H.G.S.X.
0.1215.10.99GmaAffx.85171.1.S1_atBU091668--7e-6At5g10710protein bindingO.I.H.G.S.X.
0.1013.00.99GmaAffx.56409.1.S1_atBU965321--1e-16At1g08750GPI-anchor transamidase, putativeO.I.H.G.S.X.
0.0710.20.98GmaAffx.93620.1.S1_s_atCF809345--3e-19At3g61140FUS6 (FUSCA 6)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os04g0569400, orthologous to the query gene, Gma.1479.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5573.7Os04g0569400At4g19120-Putative methyltransferase DUF248 family protein2e-11At4g00740dehydration-responsive protein-relatedO.I.H.G.S.X.
0.7793.1Os01g0543000At4g19120-Conserved hypothetical protein2e+0At1g10940SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)O.I.H.G.S.X.
0.5068.0Os07g0510200At4g19120-Glycoside hydrolase, family 17 protein9e-1At2g01630glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putativeO.I.H.G.S.X.
0.3338.8Os02g0118400At4g19120-Alpha-N-acetylgalactosaminidealpha-2,6-sialyltransferase (EC 2.4.99.3) (GalNAcalpha-2,6-sialyltransferase I) (ST6GalNAc I)(Sialyltransferase 7A)1e-27At3g48820glycosyl transferase family 29 protein / sialyltransferase family proteinO.I.H.G.S.X.
0.2524.1Os01g0811400At4g19120-Exostosin-like family protein1e-18At5g16890exostosin family proteinO.I.H.G.S.X.
0.2524.1Os07g0666200At4g19120-Conserved hypothetical protein2e+0At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage