Co-expression analysis

Gene ID	Gma.14354.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g53610: ATRAB8 (HF=3e-67)
Module size	13 genes
NF	0.58
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	78.8	0.98	Gma.14354.1.S1_at	AW755388	-	-	3e-67	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.99	Gma.2954.1.S1_at	CD404770	-	-	4e-34	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.99	Gma.6353.1.S1_at	AI960028	-	-	1e-4	At1g67250	proteasome maturation factor UMP1 family protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.98	Gma.15883.1.S1_x_at	AF255338.1	20S proteasome subunit	-	2e-86	At1g53850	PAE1	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.99	Gma.11256.1.S1_at	CD401123	-	-	7e-28	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.99	Gma.10826.5.S1_x_at	BM732455	-	-	2e-108	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.99	Gma.6150.2.S1_s_at	CD416056	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.99	Gma.5581.1.S1_at	CD392224	-	-	8e-53	At3g27430	PBB1	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.99	Gma.5964.1.S1_at	AW348696	-	-	3e-62	At3g13235	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.99	Gma.3626.2.S1_x_at	BQ612673	-	-	2e-60	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.99	Gma.17905.2.S1_at	CD393233	-	-	8e-37	At4g01320	ATSTE24	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.99	Gma.2892.1.S1_at	CD398484	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.99	Gma.5810.2.S1_a_at	AI965339	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	96.0	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage