Co-expression analysis

Gene ID	Gma.1413.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g15880: GOS11 (golgi snare 11) (HF=8e-37)
Module size	6 genes
NF	0.70
%ile	95.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.98	Gma.1413.1.S1_a_at	AW734487	-	-	8e-37	At1g15880	GOS11 (golgi snare 11)	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.98	GmaAffx.86728.1.S1_at	BI967919	-	-	3e-7	At4g20380	zinc finger protein (LSD1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.3852.1.S1_at	CD399104	-	-	8e-75	At5g27840	TOPP8	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.97	GmaAffx.86728.3.S1_s_at	BG239619	-	-	7e-5	At1g32540	LOL1 (LSD ONE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.4443.1.S1_at	AW348382	-	-	6e+0	At5g23903	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.10215.1.S1_a_at	AY263347.1	protein kinase Pti1	-	1e-73	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.2	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
29.1	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.4	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.73007.1.A1_at, orthologous to the query gene, Gma.1413.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.73007.1.A1_at	At1g15880	-	-	2e-16	At1g15880	GOS11 (golgi snare 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.5701.1.S1_at	At1g15880	-	-	4e-11	At1g20460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.3422.1.S1_at	At1g15880	hypothetical protein	-	6e-75	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.209261.1.S1_at	At1g15880	hypothetical protein	-	1e-48	At2g40280	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.31831.1.S1_at	At1g15880	-	-	2e-15	At3g51030	ATTRX1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.1454.2.S1_a_at	At1g15880	hypothetical protein	-	7e-22	At3g08505	zinc finger (CCCH-type/C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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