Co-expression analysis

Gene ID	Gma.13629.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g23910: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.63
%ile	91.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.83	Gma.13629.1.A1_at	CD402075	-	-	2e-1	At4g23910	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.83	GmaAffx.80413.1.A1_at	AW620950	-	-	7e-1	At4g36090	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.83	Gma.6781.1.S1_at	BU764071	-	-	5e-2	At5g40490	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.85	Gma.17504.1.S1_at	BF595106	-	-	2e-1	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.90	GmaAffx.22396.1.S1_at	BF597175	-	-	3e+0	At5g11320	YUC4 (YUCCA4)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.85	GmaAffx.21250.1.S1_at	AW598021	-	-	7e-1	At1g03630	POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.0	99.6	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
15.7	99.6	GSM147940	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
14.0	99.6	GSM147939	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
12.0	99.4	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
9.6	99.2	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.3	98.9	GSM147941	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.1	98.8	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.1	98.8	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.7	98.7	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.3	98.6	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.2	98.6	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.1	98.5	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.9	98.5	GSM201118	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.8	98.4	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.5	98.3	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.4	98.2	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.3	98.2	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.3	98.2	GSM182037	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.2	98.1	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.0	98.0	GSM182043	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.9	98.0	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.9	98.0	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.8	97.9	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.6	97.7	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.5	97.7	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.5	97.7	GSM191090	Soybean_Cotyledon_OI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5	97.7	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.5	97.7	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.5	97.7	GSM182046	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.4	97.6	GSM182039	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage