Co-expression analysis

Gene ID	Gma.13358.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g15740: zinc finger (C2H2 type) family protein (HF=1e-2)
Module size	6 genes
NF	0.01
%ile	7.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.81	Gma.13358.1.S1_at	BI317052	-	-	1e-2	At2g15740	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.94	GmaAffx.64262.1.A1_at	BI969154	-	-	7e-1	At1g07450	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.91	GmaAffx.92032.1.S1_at	CF807757	-	-	1e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.90	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
-	1.4	0.94	Gma.2534.2.S1_s_at	CD393721	-	-	2e-76	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
-	1.4	0.94	GmaAffx.89861.1.S1_s_at	CK606562	Ubiquitin	-	3e-127	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	99.1	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.7	96.8	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.6	96.7	GSM201097	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.5	96.6	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.5	96.6	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.4	96.4	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.4	96.4	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.3	96.2	GSM147939	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.3	96.2	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.3	96.2	GSM147951	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.2	96.0	GSM147940	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.1	95.8	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.1	95.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.1	95.8	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.0	95.6	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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