Co-expression analysis

Gene ID	Gma.13268.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g60340: maoC-like dehydratase domain-containing protein (HF=2e-18)
Module size	20 genes
NF	0.28
%ile	53.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	0.97	Gma.13268.1.S1_at	CD392209	-	-	2e-18	At5g60340	maoC-like dehydratase domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	GmaAffx.65218.1.A1_at	BU544013	-	-	9e-1	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.12059.1.S1_at	BG651492	-	-	2e+0	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.97	Gma.2809.1.S1_at	CD397162	-	-	6e-44	At4g29160	SNF7.1	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.6975.2.S1_a_at	BU546346	-	-	4e-1	At4g35930	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.3632.1.A1_at	BI316950	-	-	5e-8	At3g57480	zinc finger (C2H2 type, AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.97	GmaAffx.90324.1.S1_at	CF806049	-	-	2e-26	At5g51940	NRPB6A	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.97	Gma.4790.1.S1_at	BM270023	-	-	5e-23	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	GmaAffx.2122.1.S1_at	BI498615	-	-	5e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.10829.1.S1_at	CD404695	-	-	1e-4	At2g28360	-	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.98	Gma.4975.1.S1_at	BI970178	-	-	6e-25	At5g06420	zinc finger (CCCH-type/C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.7858.1.A1_at	AW733417	-	-	5e-3	At1g04230	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.97	Gma.1538.2.A1_at	CA935611	-	-	2e-5	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.13038.1.S1_at	BE822071	-	-	3e-9	At1g45976	SBP1 (s-ribonuclease binding protein 1)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.97	Gma.10728.1.A1_at	CD410733	-	-	2e-15	At3g19080	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.97	GmaAffx.83531.1.A1_at	BU550540	-	-	3e-1	At3g09870	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.98	Gma.7345.1.S1_a_at	BU547099	-	-	8e-8	At3g19910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	GmaAffx.71118.1.A1_s_at	AW349718	-	-	3e-9	At4g34660	SH3 domain-containing protein 2 (SH3P2)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.98	GmaAffx.46238.1.S1_at	BF595415	-	-	2e-2	At1g80560	3-isopropylmalate dehydrogenase, chloroplast, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	96.0	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM184828	Whole Seed at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.1	95.8	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.1	95.8	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.1	95.8	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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