Co-expression analysis

Gene ID	Gma.13160.1.S1_at
Gene name	ascorbate peroxidase 1, cytosolic
Homology with Arabidopsis	Similar to At1g07890: APX1 (ascorbate peroxidase 1) (HF=5e-23)
Module size	6 genes
NF	0.45
%ile	75.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.99	Gma.13160.1.S1_at	L10292.1	ascorbate peroxidase 1, cytosolic	-	5e-23	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	Gma.14354.1.S1_at	AW755388	-	-	3e-67	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.14354.1.S1_x_at	AW755388	-	-	3e-67	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	Gma.6150.2.S1_s_at	CD416056	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.99	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.99	Gma.10826.5.S1_x_at	BM732455	-	-	2e-108	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	96.4	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.5471.1.A1_a_at, orthologous to the query gene, Gma.13160.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.5471.1.A1_a_at	At1g07890	hypothetical protein	-	3e-15	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.1502.1.S1_a_at	At1g07890	hypothetical protein	-	2e-11	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.4277.1.S1_a_at	At1g07890	-	-	1e-131	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.21710.1.S1_s_at	At1g07890	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.1258.4.S1_s_at	At1g07890	actin 1 /// actin 9	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4306.1.S1_at	At1g07890	hypothetical protein	-	5e-78	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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