Co-expression analysis

Gene ID	Gma.13160.1.S1_at
Gene name	ascorbate peroxidase 1, cytosolic
Homology with Arabidopsis	Similar to At1g07890: APX1 (ascorbate peroxidase 1) (HF=5e-23)
Module size	6 genes
NF	0.45
%ile	75.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.99	Gma.13160.1.S1_at	L10292.1	ascorbate peroxidase 1, cytosolic	-	5e-23	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	Gma.14354.1.S1_at	AW755388	-	-	3e-67	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.14354.1.S1_x_at	AW755388	-	-	3e-67	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	Gma.6150.2.S1_s_at	CD416056	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.99	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.99	Gma.10826.5.S1_x_at	BM732455	-	-	2e-108	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	96.4	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig1728_at, orthologous to the query gene, Gma.13160.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	Contig1728_at	At1g07890	-	-	1e-14	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig23742_at	At1g07890	-	-	2e-1	At1g05270	TraB family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig10503_at	At1g07890	-	-	1e-2	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig3232_at	At1g07890	-	-	1e-37	At2g44350	ATCS	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig13113_at	At1g07890	-	-	1e-2	At5g02760	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig9134_at	At1g07890	-	-	4e-22	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig11840_s_at	At1g07890	-	-	3e-2	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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