Co-expression analysis

Gene ID Gma.12912.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g49930: emb1441 (embryo defective 1441) (HF=4e-6)
Module size 28 genes
NF 0.21
%ile 44.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8993.50.96Gma.12912.1.S1_atCD395260--4e-6At5g49930emb1441 (embryo defective 1441)O.I.H.G.S.X.
0.4665.50.96Gma.3987.2.S1_a_atBI971594--1e+0At5g56980unknown proteinO.I.H.G.S.X.
0.3751.70.97Gma.1936.1.S1_atAW348232--4e-36At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.3548.60.97Gma.6474.1.A1_s_atBI788042--6e-2At2g28700AGL46 (AGAMOUS-LIKE 46)O.I.H.G.S.X.
0.2939.00.97GmaAffx.25379.2.S1_atBM524185--3e+0At2g26370MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.2939.00.97Gma.952.2.A1_atCD398948--2e-1Atmg00370-O.I.H.G.S.X.
0.2430.90.98GmaAffx.77340.1.S1_atBG551682--1e+0At3g15670late embryogenesis abundant protein, putative / LEA protein, putativeO.I.H.G.S.X.
0.2329.90.97Gma.9846.1.S1_atBE190786--2e-6At2g35330protein binding / zinc ion bindingO.I.H.G.S.X.
0.2228.10.97GmaAffx.13572.1.A1_atBG652980--1e+0At4g10970unknown proteinO.I.H.G.S.X.
0.2228.10.97Gma.11018.1.S1_atBQ453505--2e+0At5g65000nucleotide-sugar transporter family proteinO.I.H.G.S.X.
0.1923.70.98GmaAffx.78614.1.S1_atBQ611991--4e+0At1g77020DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.1923.70.97Gma.2670.1.S1_atBM309605--3e+0At3g07800thymidine kinase, putativeO.I.H.G.S.X.
0.1822.30.97GmaAffx.76350.1.A1_atBE555004--8e-1At3g21371unknown proteinO.I.H.G.S.X.
0.1822.30.98Gma.3720.1.S1_atBU550185--2e-66At4g24860AAA-type ATPase family proteinO.I.H.G.S.X.
0.1822.30.97Gma.437.1.S1_s_atCD401627Profilin, PRO2-1e-10At2g19760PRF1 (PROFILIN 1)O.I.H.G.S.X.
0.1721.20.97Gma.7382.1.A1_atBE819929--4e+0At2g24320unknown proteinO.I.H.G.S.X.
0.1721.20.98Gma.15387.2.S1_atAW101379--2e-52At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.1619.70.97Gma.17588.3.S1_x_atBI426637--1e-59At1g80490TPR1 (TOPLESS-RELATED 1)O.I.H.G.S.X.
0.1619.70.97GmaAffx.25868.1.A1_s_atBU545147--3e-13At2g40190glycosyl transferase family 1 proteinO.I.H.G.S.X.
0.1619.70.97GmaAffx.15074.1.S1_atBE659396--1e-17At1g15860-O.I.H.G.S.X.
0.1619.70.97GmaAffx.65750.1.S1_atCA935827--3e+0At5g36001-O.I.H.G.S.X.
0.1316.30.97Gma.3109.1.A1_atCD408055--3e+0At2g46090diacylglycerol kinase family proteinO.I.H.G.S.X.
0.1215.10.98Gma.7528.1.S1_s_atCD415645--5e-10At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)O.I.H.G.S.X.
0.1215.10.98GmaAffx.21302.1.S1_atBU547335--7e-1At3g57785unknown proteinO.I.H.G.S.X.
0.1114.20.98Gma.17850.1.S1_atCD398878--9e-8At5g06830unknown proteinO.I.H.G.S.X.
0.1114.20.98Gma.5686.1.S1_atCA935460--3e-58At5g47080CKB1O.I.H.G.S.X.
0.1013.00.97Gma.2434.2.S1_atAW310370--1e-10At3g02770dimethylmenaquinone methyltransferase family proteinO.I.H.G.S.X.
0.0912.00.97Gma.1568.1.S1_atBE820565--1e-51At2g37160transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.596.6GSM191087Soybean_Cotyledon_II1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.296.0GSM191088Soybean_Cotyledon_II2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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