Co-expression analysis

Gene ID	Gma.12848.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g43430: ETFBETA (HF=2e-1)
Module size	6 genes
NF	0.51
%ile	82.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	0.83	Gma.12848.1.A1_at	CD392495	-	-	2e-1	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.82	Gma.8197.1.S1_at	AI856397	-	-	9e-37	At1g77090	thylakoid lumenal 29.8 kDa protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.83	Gma.1179.1.S1_at	AY096000.1	L-asparaginase	-	5e-39	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.86	Gma.1765.1.A1_at	BE823083	-	-	4e+0	At2g30115	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.82	GmaAffx.73153.1.S1_at	BI498407	-	-	2e-8	At2g36500	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.84	Gma.14033.1.A1_at	CD414059	-	-	3e+0	At2g42070	ATNUDX23 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.5	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
20.8	99.7	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
20.7	99.7	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
7.7	99.0	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.5	98.9	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.3	98.9	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.8	98.7	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.7	98.4	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.7	98.4	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.7	98.4	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.5	98.3	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.4	98.2	GSM170926	Rust Innoculated, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
5.3	98.2	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
5.3	98.2	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.2	98.1	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.8	97.9	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.8	97.9	GSM209573	mock_0hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.6	97.7	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.6	97.7	GSM170927	Rust Innoculated, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
4.6	97.7	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.2	97.4	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.2	97.4	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.2	97.4	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.1	97.3	GSM170929	Rust Innoculated, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
4.1	97.3	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.1	97.3	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.0	97.2	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.0	97.2	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.0	97.2	GSM170925	V2 Control, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.9	97.1	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage