Co-expression analysis

Gene ID Gma.12588.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g27530: - (HF=3e+0)
Module size 25 genes
NF 0.40
%ile 70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8392.50.97Gma.12588.1.A1_atCD391891--3e+0At1g27530-O.I.H.G.S.X.
0.5878.80.97GmaAffx.76350.1.A1_s_atBE555004--8e-1At3g21371unknown proteinO.I.H.G.S.X.
0.5576.30.98Gma.11015.2.S1_atBI699850--9e-34At3g53500zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.5273.10.98GmaAffx.75093.1.A1_s_atCD407666--1e+1At5g65640bHLH093 (beta HLH protein 93)O.I.H.G.S.X.
0.5273.10.98Gma.3109.1.A1_atCD408055--3e+0At2g46090diacylglycerol kinase family proteinO.I.H.G.S.X.
0.5172.30.97Gma.6922.1.S1_atBU545996--3e-7At2g03120ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE)O.I.H.G.S.X.
0.5071.70.98Gma.2259.1.S1_atCD392275--3e-83At1g16470PAB1 (PROTEASOME SUBUNIT PAB1)O.I.H.G.S.X.
0.4968.30.98GmaAffx.69688.11.A1_s_atCD413010--3e+0At2g36680-O.I.H.G.S.X.
0.4968.30.98GmaAffx.1301.61.A1_atBG650277--7e+0At3g26740CCL (CCR-LIKE)O.I.H.G.S.X.
0.4563.90.97GmaAffx.91276.1.S1_atCF807001--7e-1At5g48440oxidoreductaseO.I.H.G.S.X.
0.4563.90.98GmaAffx.5401.1.S1_s_atBM732974--2e-1At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.4563.90.97Gma.9722.1.S1_atBE823732--5e-4At1g05720selenoprotein family proteinO.I.H.G.S.X.
0.4463.30.98Gma.6450.1.S1_atCD401012--6e-22At1g18070EF-1-alpha-related GTP-binding protein, putativeO.I.H.G.S.X.
0.4360.60.97Gma.6463.1.S1_atBQ298460--2e-23At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.3751.70.98Gma.16382.1.S1_atAW317554--2e-61At2g20930-O.I.H.G.S.X.
0.3548.60.97Gma.4296.1.S1_atBM954335--1e-5At5g50650WD-40 repeat family protein / St12p protein, putativeO.I.H.G.S.X.
0.3548.60.98Gma.6150.2.S1_x_atCD416056--1e-23At5g59880ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)O.I.H.G.S.X.
0.3548.60.98Gma.10799.1.S1_atBG237181--4e-96At4g26100CK1 (CASEIN KINASE 1)O.I.H.G.S.X.
0.3447.20.98Gma.5229.1.A1_atBI970237--6e-6At4g18905transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3346.10.98Gma.7413.1.S1_atBI970444--3e-2At2g06025GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.3040.40.97Gma.9951.1.S1_atBM085764--3e-7At4g34700complex 1 family protein / LVR family proteinO.I.H.G.S.X.
0.3040.40.98Gma.3839.1.S1_a_atCD391787--2e-69At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.3040.40.97Gma.16104.1.S1_atCD392889--4e-35At3g1608060S ribosomal protein L37 (RPL37C)O.I.H.G.S.X.
0.2228.10.98Gma.17906.1.S1_s_atBI702059--2e-11At2g20280zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.2025.10.98Gma.8959.1.A1_atBU765891--1e-1At1g16810unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.598.7GSM191079Soybean_Cotyledon_ES1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.998.5GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.898.4GSM182036Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.698.3GSM182031Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.398.2GSM147933Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.298.1GSM191080Soybean_Cotyledon_ES2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.098.0GSM182034Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.797.8GSM182033Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.497.6GSM191075Soybean_Cotyledon_EP1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.497.6GSM191076Soybean_Cotyledon_EP2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.397.5GSM191077Soybean_Cotyledon_SUS1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.297.4GSM191081Soybean_Cotyledon_EN1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.297.4GSM191078Soybean_Cotyledon_SUS2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.297.4GSM201119Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.197.3GSM147952Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.197.3GSM182030Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.097.2GSM191092Soybean_Cotyledon_SEED2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.097.2GSM182047Whole Seed at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.997.1GSM201111Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.997.1GSM201127Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.897.0GSM191091Soybean_Cotyledon_SEED1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.897.0GSM182029Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.897.0GSM201115Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.897.0GSM147934Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.796.8GSM191088Soybean_Cotyledon_II2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.796.8GSM147948Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.796.8GSM147949Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.796.8GSM182044Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.696.7GSM147941Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.696.7GSM201118Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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