CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.12512.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g11608: - (HF=1e+0)

Module size 6 genes

NF 0.03

%ile 13.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 92.5 0.97 Gma.12512.1.S1_at CD392421 - - 1e+0 At1g11608 - O.I. H.G. S.X.
0.22 28.1 0.97 GmaAffx.83815.1.S1_s_at BG404904 - - 1e+0 At1g04330 unknown protein O.I. H.G. S.X.
0.04 7.0 0.98 Gma.8354.1.S1_at BE658968 - - 4e-22 At3g03070 NADH-ubiquinone oxidoreductase-related O.I. H.G. S.X.
0.03 5.8 0.98 Gma.6495.1.S1_at BQ612701 - - 5e-51 At3g25800 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) O.I. H.G. S.X.
0.01 3.4 0.97 Gma.5868.1.S1_at BU084222 - - 7e-10 At1g19650 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative O.I. H.G. S.X.
0.01 3.4 0.97 GmaAffx.89191.1.A1_x_at CK606438 - - 1e-20 At3g08520 60S ribosomal protein L41 (RPL41D) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	92.5	0.97	Gma.12512.1.S1_at	CD392421	-	-	1e+0	At1g11608	-	O.I.	H.G.	S.X.
0.22	28.1	0.97	GmaAffx.83815.1.S1_s_at	BG404904	-	-	1e+0	At1g04330	unknown protein	O.I.	H.G.	S.X.
0.04	7.0	0.98	Gma.8354.1.S1_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.
0.03	5.8	0.98	Gma.6495.1.S1_at	BQ612701	-	-	5e-51	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.
0.01	3.4	0.97	Gma.5868.1.S1_at	BU084222	-	-	7e-10	At1g19650	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	O.I.	H.G.	S.X.
0.01	3.4	0.97	GmaAffx.89191.1.A1_x_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, HY02J15u_at, orthologous to the query gene, Gma.12512.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.4 HY02J15u_at At1g11608 - - 5e+0 At2g46780 RNA binding / nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.68 85.1 HT06M11u_at At1g11608 - - 1e+1 Atcg01310 - O.I. H.G. S.X.
0.67 84.7 EBro08_SQ007_C12_at At1g11608 - - 9e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.
0.64 80.9 rbaal41c09_at At1g11608 - - 3e-15 At3g11940 ATRPS5A (RIBOSOMAL PROTEIN 5A) O.I. H.G. S.X.
0.64 80.9 HV_CEa0014H05r2_at At1g11608 - - 3e+0 At5g64850 unknown protein O.I. H.G. S.X.
0.64 80.9 Contig23272_at At1g11608 - - 2e+1 At5g44550 integral membrane family protein O.I. H.G. S.X.
0.64 80.9 EBem04_SQ003_H15_at At1g11608 - - 3e+0 At5g33806 unknown protein O.I. H.G. S.X.
0.63 80.3 baal1j07_at At1g11608 - - 5e-15 At4g30800 40S ribosomal protein S11 (RPS11B) O.I. H.G. S.X.
0.63 80.3 S0001000057I10F1_at At1g11608 - - 1e+1 At3g06190 BPM2 (BTB-POZ AND MATH DOMAIN 2) O.I. H.G. S.X.
0.63 80.3 EBro02_SQ005_L23_at At1g11608 - - 1e-3 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) O.I. H.G. S.X.
0.63 80.3 HVSMEl0006C17r2_x_at At1g11608 - - 1e+0 At4g32090 galactosyltransferase O.I. H.G. S.X.
0.62 79.1 EBro08_SQ010_M14_at At1g11608 - - 1e-9 At3g02190 60S ribosomal protein L39 (RPL39B) O.I. H.G. S.X.
0.62 79.1 EBro08_SQ004_N23_at At1g11608 - - 6e-5 At1g76100 PETE1 (PLASTOCYANIN 1) O.I. H.G. S.X.
0.62 79.1 HT07P24u_at At1g11608 - - 4e+0 At3g49305 - O.I. H.G. S.X.
0.61 78.7 Contig20777_at At1g11608 - - 1e-1 At3g47640 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.61 78.7 Contig7390_at At1g11608 - - 5e-8 At5g42000 ORMDL family protein O.I. H.G. S.X.
0.61 78.7 HZ55F22r_at At1g11608 - - 4e+0 At4g18740 transcription termination factor O.I. H.G. S.X.
0.60 77.3 Contig21090_at At1g11608 - - 1e+0 At3g06760 - O.I. H.G. S.X.
0.60 77.3 HS06P18u_at At1g11608 - - 5e-1 At3g22630 PBD1 (20S PROTEASOME BETA SUBUNIT D1) O.I. H.G. S.X.
0.59 75.8 HW03H07u_x_at At1g11608 - - 1e+0 At1g18510 TET16 (TETRASPANIN 16) O.I. H.G. S.X.
0.58 74.9 Contig25766_at At1g11608 - - 7e-18 At2g36230 APG10 (ALBINO AND PALE GREEN 10) O.I. H.G. S.X.
0.57 74.9 HD05M20r_at At1g11608 - - 7e-1 At4g18430 AtRABA1e (Arabidopsis Rab GTPase homolog A1e) O.I. H.G. S.X.
0.57 74.9 HVSMEa0011N23r2_at At1g11608 - - 4e+0 At1g04260 MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) O.I. H.G. S.X.
0.57 74.9 HD03N13u_at At1g11608 - - 2e+1 At5g42591 unknown protein O.I. H.G. S.X.
0.56 74.3 HS08C02u_at At1g11608 - - 4e-1 At2g44820 unknown protein O.I. H.G. S.X.
0.56 74.3 Contig12986_at At1g11608 - - 7e-13 At3g28007 nodulin MtN3 family protein O.I. H.G. S.X.
0.56 74.3 Contig2379_s_at At1g11608 - - 2e-8 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein O.I. H.G. S.X.
0.56 74.3 Contig23039_at At1g11608 - - 4e-2 At2g45920 U-box domain-containing protein O.I. H.G. S.X.
0.55 72.0 Contig25088_at At1g11608 - - 2e-18 At5g36210 serine-type peptidase O.I. H.G. S.X.
0.55 72.0 Contig24225_at At1g11608 - - 2e-12 At3g10360 APUM4 (Arabidopsis Pumilio 4) O.I. H.G. S.X.
0.54 70.3 2623978_R_1403-2212_at At1g11608 - - 2e+0 At3g16350 myb family transcription factor O.I. H.G. S.X.
0.54 70.3 HY06F24u_x_at At1g11608 - - 1e+1 At5g05710 pleckstrin homology (PH) domain-containing protein O.I. H.G. S.X.
0.52 68.3 9507414_R_4264-4644_at At1g11608 - - 1e+1 At5g06320 NHL3 O.I. H.G. S.X.
0.52 68.3 HT06J01u_at At1g11608 - - 2e-1 At4g36670 mannitol transporter, putative O.I. H.G. S.X.
0.51 67.5 rbaal31o11_x_at At1g11608 - - 5e+0 At4g31050 lipoyltransferase (LIP2p) O.I. H.G. S.X.
0.51 67.5 Contig10097_at At1g11608 - - 4e-1 At3g16450 jacalin lectin family protein O.I. H.G. S.X.
0.51 67.5 HVSMEm0018O23r2_at At1g11608 - - 1e-3 At4g23150 protein kinase family protein O.I. H.G. S.X.
0.51 67.5 EBro08_SQ008_B03_at At1g11608 - - 9e-1 At5g13440 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative O.I. H.G. S.X.
0.51 67.5 HY02C19u_at At1g11608 - - 5e+0 At4g15610 integral membrane family protein O.I. H.G. S.X.
0.50 66.9 HA06j10r_at At1g11608 - - 2e+0 At4g21920 unknown protein O.I. H.G. S.X.
0.50 66.9 Contig245_s_at At1g11608 - - 2e+0 At4g16380 metal ion binding O.I. H.G. S.X.
0.48 63.2 V00087.1_at At1g11608 - - 3e-1 At5g43525 - O.I. H.G. S.X.
0.48 63.2 HVSMEf0019H01r2_at At1g11608 - - 1e+1 At3g27460 unknown protein O.I. H.G. S.X.
0.48 63.2 HY03E24u_at At1g11608 - - 2e+0 At4g26720 PPX1 (PROTEIN PHOSPHATASE X 1) O.I. H.G. S.X.
0.47 62.2 HVSMEm0021I24r2_at At1g11608 - - 3e+0 At1g68650 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.4	HY02J15u_at	At1g11608	-	-	5e+0	At2g46780	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.68	85.1	HT06M11u_at	At1g11608	-	-	1e+1	Atcg01310	-	O.I.	H.G.	S.X.
0.67	84.7	EBro08_SQ007_C12_at	At1g11608	-	-	9e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.
0.64	80.9	rbaal41c09_at	At1g11608	-	-	3e-15	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	O.I.	H.G.	S.X.
0.64	80.9	HV_CEa0014H05r2_at	At1g11608	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.
0.64	80.9	Contig23272_at	At1g11608	-	-	2e+1	At5g44550	integral membrane family protein	O.I.	H.G.	S.X.
0.64	80.9	EBem04_SQ003_H15_at	At1g11608	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.
0.63	80.3	baal1j07_at	At1g11608	-	-	5e-15	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.
0.63	80.3	S0001000057I10F1_at	At1g11608	-	-	1e+1	At3g06190	BPM2 (BTB-POZ AND MATH DOMAIN 2)	O.I.	H.G.	S.X.
0.63	80.3	EBro02_SQ005_L23_at	At1g11608	-	-	1e-3	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	O.I.	H.G.	S.X.
0.63	80.3	HVSMEl0006C17r2_x_at	At1g11608	-	-	1e+0	At4g32090	galactosyltransferase	O.I.	H.G.	S.X.
0.62	79.1	EBro08_SQ010_M14_at	At1g11608	-	-	1e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	O.I.	H.G.	S.X.
0.62	79.1	EBro08_SQ004_N23_at	At1g11608	-	-	6e-5	At1g76100	PETE1 (PLASTOCYANIN 1)	O.I.	H.G.	S.X.
0.62	79.1	HT07P24u_at	At1g11608	-	-	4e+0	At3g49305	-	O.I.	H.G.	S.X.
0.61	78.7	Contig20777_at	At1g11608	-	-	1e-1	At3g47640	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.61	78.7	Contig7390_at	At1g11608	-	-	5e-8	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.
0.61	78.7	HZ55F22r_at	At1g11608	-	-	4e+0	At4g18740	transcription termination factor	O.I.	H.G.	S.X.
0.60	77.3	Contig21090_at	At1g11608	-	-	1e+0	At3g06760	-	O.I.	H.G.	S.X.
0.60	77.3	HS06P18u_at	At1g11608	-	-	5e-1	At3g22630	PBD1 (20S PROTEASOME BETA SUBUNIT D1)	O.I.	H.G.	S.X.
0.59	75.8	HW03H07u_x_at	At1g11608	-	-	1e+0	At1g18510	TET16 (TETRASPANIN 16)	O.I.	H.G.	S.X.
0.58	74.9	Contig25766_at	At1g11608	-	-	7e-18	At2g36230	APG10 (ALBINO AND PALE GREEN 10)	O.I.	H.G.	S.X.
0.57	74.9	HD05M20r_at	At1g11608	-	-	7e-1	At4g18430	AtRABA1e (Arabidopsis Rab GTPase homolog A1e)	O.I.	H.G.	S.X.
0.57	74.9	HVSMEa0011N23r2_at	At1g11608	-	-	4e+0	At1g04260	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)	O.I.	H.G.	S.X.
0.57	74.9	HD03N13u_at	At1g11608	-	-	2e+1	At5g42591	unknown protein	O.I.	H.G.	S.X.
0.56	74.3	HS08C02u_at	At1g11608	-	-	4e-1	At2g44820	unknown protein	O.I.	H.G.	S.X.
0.56	74.3	Contig12986_at	At1g11608	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.
0.56	74.3	Contig2379_s_at	At1g11608	-	-	2e-8	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	O.I.	H.G.	S.X.
0.56	74.3	Contig23039_at	At1g11608	-	-	4e-2	At2g45920	U-box domain-containing protein	O.I.	H.G.	S.X.
0.55	72.0	Contig25088_at	At1g11608	-	-	2e-18	At5g36210	serine-type peptidase	O.I.	H.G.	S.X.
0.55	72.0	Contig24225_at	At1g11608	-	-	2e-12	At3g10360	APUM4 (Arabidopsis Pumilio 4)	O.I.	H.G.	S.X.
0.54	70.3	2623978_R_1403-2212_at	At1g11608	-	-	2e+0	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.
0.54	70.3	HY06F24u_x_at	At1g11608	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.
0.52	68.3	9507414_R_4264-4644_at	At1g11608	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.
0.52	68.3	HT06J01u_at	At1g11608	-	-	2e-1	At4g36670	mannitol transporter, putative	O.I.	H.G.	S.X.
0.51	67.5	rbaal31o11_x_at	At1g11608	-	-	5e+0	At4g31050	lipoyltransferase (LIP2p)	O.I.	H.G.	S.X.
0.51	67.5	Contig10097_at	At1g11608	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.
0.51	67.5	HVSMEm0018O23r2_at	At1g11608	-	-	1e-3	At4g23150	protein kinase family protein	O.I.	H.G.	S.X.
0.51	67.5	EBro08_SQ008_B03_at	At1g11608	-	-	9e-1	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.
0.51	67.5	HY02C19u_at	At1g11608	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.
0.50	66.9	HA06j10r_at	At1g11608	-	-	2e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	Contig245_s_at	At1g11608	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.
0.48	63.2	V00087.1_at	At1g11608	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.
0.48	63.2	HVSMEf0019H01r2_at	At1g11608	-	-	1e+1	At3g27460	unknown protein	O.I.	H.G.	S.X.
0.48	63.2	HY03E24u_at	At1g11608	-	-	2e+0	At4g26720	PPX1 (PROTEIN PHOSPHATASE X 1)	O.I.	H.G.	S.X.
0.47	62.2	HVSMEm0021I24r2_at	At1g11608	-	-	3e+0	At1g68650	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Gma.12512.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g11608: - (HF=1e+0)
Module size	6 genes
NF	0.03
%ile	13.8

Co-expression analysis

Gene ID Gma.12512.1.S1_at Gene name Homology with ArabidopsisSimilar to At1g11608: - (HF=1e+0) Module size 6 genes NF 0.03 %ile 13.8

Co-expressed genes

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Gma.12512.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g11608: - (HF=1e+0)

Module size 6 genes

NF 0.03

%ile 13.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays