Co-expression analysis

Gene ID	Gma.12342.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g25460: unknown protein (HF=1e-5)
Module size	6 genes
NF	0.19
%ile	42.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	0.91	Gma.12342.3.S1_at	BQ081225	-	-	1e-5	At5g25460	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.93	Gma.12342.1.S1_s_at	CD405864	-	-	3e-6	At5g11420	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.93	Gma.17979.1.S1_a_at	CD412817	-	-	5e-2	At2g13570	NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.94	Gma.17979.1.S1_x_at	CD412817	-	-	5e-2	At2g13570	NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.92	GmaAffx.89132.1.A1_s_at	CK605592	-	-	3e+0	At4g37500	xanthine dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.92	Gma.16419.1.A1_at	BM142992	-	-	2e-2	At2g45180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.3	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
10.2	99.3	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.9	99.3	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.8	99.3	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.6	99.2	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.4	99.2	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.3	99.2	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.3	99.2	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.3	99.2	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.2	99.2	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.0	99.2	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.9	99.2	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.9	99.2	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.9	99.2	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.8	99.1	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.8	99.1	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.5	99.1	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.5	99.1	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.3	99.1	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.0	99.0	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.9	99.0	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.7	99.0	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.3	98.9	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.3	98.9	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.0	98.8	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.0	98.8	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
6.7	98.7	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.4	98.6	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.3	98.6	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.3	98.6	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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