Co-expression analysis

Gene ID	Gma.12342.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g11420: - (HF=3e-6)
Module size	21 genes
NF	0.47
%ile	77.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.91	Gma.12342.1.S1_s_at	CD405864	-	-	3e-6	At5g11420	-	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.98	Gma.1316.5.S1_at	BF067733	-	-	4e-12	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.97	Gma.1316.2.S1_a_at	CD417424	-	-	4e-14	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.97	Gma.1316.5.S1_x_at	BF067733	-	-	4e-12	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.97	Gma.11116.3.S1_s_at	CD394432	-	-	1e-7	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.92	Gma.17979.1.S1_x_at	CD412817	-	-	5e-2	At2g13570	NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.97	GmaAffx.1301.70.S1_s_at	BE210977	-	-	1e+1	At1g04980	ATPDIL2-2 (PDI-LIKE 2-2)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.96	Gma.1316.5.S1_a_at	BF067733	-	-	4e-12	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.94	Gma.16419.1.A1_at	BM142992	-	-	2e-2	At2g45180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.16838.1.S1_x_at	CD406104	-	-	6e-15	At1g52230	PSAH2 (PHOTOSYSTEM I SUBUNIT H2)	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.97	Gma.9688.2.S1_a_at	CA938457	-	-	2e-1	At5g30490	-	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.96	Gma.10591.1.S1_at	CD415483	-	-	6e-28	At1g32470	glycine cleavage system H protein, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.1316.2.S1_x_at	CD417424	-	-	4e-14	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.97	Gma.7690.1.S1_at	CD417505	-	-	1e+0	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.97	Gma.16838.1.S1_at	CD406104	-	-	6e-15	At1g52230	PSAH2 (PHOTOSYSTEM I SUBUNIT H2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.97	Gma.1319.1.S1_at	CD410650	-	-	6e-3	At2g06520	PSBX (photosystem II subunit X)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.95	Gma.2569.1.S1_at	CD414265	-	-	1e+0	At4g38330	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.92	GmaAffx.89132.1.A1_s_at	CK605592	-	-	3e+0	At4g37500	xanthine dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	Gma.15830.1.S1_s_at	CD414210	-	-	1e+0	At2g03630	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.93	Gma.2202.1.S1_at	CD404038	-	-	1e-30	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.92	Gma.3208.2.S1_a_at	BI968016	-	-	5e-4	At1g72610	GER1 (GERMIN-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	99.3	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
10.0	99.3	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.8	99.3	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.8	99.3	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.5	99.2	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.3	99.2	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.3	99.2	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.2	99.2	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.1	99.2	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.9	99.2	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.9	99.2	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.8	99.1	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.7	99.1	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.6	99.1	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.5	99.1	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.5	99.1	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.4	99.1	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.4	99.1	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.3	99.1	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.2	99.0	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.0	99.0	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.9	99.0	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.8	99.0	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.6	98.9	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.3	98.9	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.3	98.9	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.3	98.9	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.0	98.8	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.8	98.7	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.7	98.7	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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