Co-expression analysis

Gene ID Gma.11541.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g19990: unknown protein (HF=2e-1)
Module size 9 genes
NF 0.45
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.90.93Gma.11541.1.S1_atBI893673--2e-1At1g19990unknown proteinO.I.H.G.S.X.
0.5979.50.94Gma.6126.1.S1_atBE823578--4e-1At5g40710zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4867.70.94Gma.18013.1.A1_atCD400520--9e-45At5g65360histone H3O.I.H.G.S.X.
0.4563.90.94GmaAffx.6998.1.S1_atBU551247--1e+0At5g50190-O.I.H.G.S.X.
0.4463.30.94Gma.14112.1.A1_atBE821492--2e+0At4g12190zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4259.30.94GmaAffx.25145.1.A1_atAW830552--2e-23At1g08560SYP111 (SYNTAXIN OF PLANTS 111)O.I.H.G.S.X.
0.3751.70.94Gma.5303.1.A1_atCD398988--2e+0At5g62500ATEB1B (END BINDING PROTEIN 1B)O.I.H.G.S.X.
0.3346.10.94Gma.17699.1.S1_atCD400295--7e-52At3g46320histone H4O.I.H.G.S.X.
0.3142.20.94GmaAffx.84492.1.S1_atBG363326--5e+0At5g26262unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.899.4GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
10.599.3GSM237069Soy_shoot apical meristem2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
10.499.3GSM267287Axillary meristem from 10-day-old soybean seedlings GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
10.399.3GSM267288Axillary meristem from 10-day-old soybean seedlings repliacte 2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
10.299.3GSM258504Soybean shoot apical meristem, 4 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
10.099.3GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
9.999.3GSM258496Vegetative soybean shoot apical meristemGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
9.899.3GSM258497Soybean Shoot Apical Meristem, 1 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
9.699.2GSM258499Soybean shoot apical meristem, 4 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
9.599.2GSM258500Soybean shoot apical meristem, 6 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
9.299.2GSM258498Soybean shoot apical meristem, 2 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
9.199.2GSM258501Soybean shoot apical meristem, 1 short-day treatment replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
8.599.1GSM258503Soybean shoot apical meristem, 2 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
6.698.7GSM258505Soybean shoot apical meristem, 6 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
4.697.7GSM182042Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.796.8GSM182041Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.796.8GSM182031Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.796.8GSM191083Soybean_Cotyledon_EPD1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.396.2GSM184829Whole Seed at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.396.2GSM29404897_2249.2F.R268L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM147949Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.296.0GSM147948Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.296.0GSM147940Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.195.8GSM184826Young trifoliate leaf, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.195.8GSM147933Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.195.8GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.095.6GSM147950Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage