Co-expression analysis

Gene ID	Gma.1144.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g48890: ATMP2 (HF=5e-38)
Module size	6 genes
NF	0.31
%ile	57.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	59.3	0.97	Gma.1144.1.S1_at	CD405843	-	-	5e-38	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.97	Gma.9531.1.S1_at	CA820670	-	-	2e-15	At1g48420	D-CDES (D-CYSTEINE DESULFHYDRASE)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.97	Gma.9531.2.S1_at	BG316396	-	-	1e+0	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.97	Gma.7298.1.S1_s_at	BG156412	-	-	1e-7	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.97	Gma.11260.1.S1_at	AI759626	-	-	2e-16	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.97	Gma.1425.2.S1_a_at	BF070610	-	-	3e-7	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.4	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
11.6	99.4	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
10.4	99.3	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
10.2	99.3	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
9.9	99.3	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
9.6	99.2	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
9.6	99.2	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
9.1	99.2	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
9.1	99.2	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.9	99.2	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.4	99.1	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
8.2	99.0	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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