Co-expression analysis

Gene ID	Gma.11341.3.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At4g17900: zinc-binding family protein (HF=8e-26)
Module size	6 genes
NF	0.48
%ile	78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.8	0.98	Gma.11341.3.S1_s_at	BM177332	-	-	8e-26	At4g17900	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.92861.1.S1_s_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.24666.1.S1_at	CA783210	-	-	2e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	GmaAffx.65140.1.S1_at	BI700031	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.17739.1.S1_at	AW310535	-	-	4e-1	At2g04220	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	PsAffx.psHA006iH10r_s_at	PsAffx.psHA006iH10r	-	-	1e+0	At2g28140	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1619241_at, orthologous to the query gene, Gma.11341.3.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	1619241_at	At4g17900	hypothetical protein LOC100250554	-	3e-37	At4g17900	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1609922_s_at	At4g17900	hypothetical protein LOC100260685	-	2e+0	At4g15910	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1621222_at	At4g17900	hypothetical protein LOC100250708	-	2e-3	At1g47056	VFB1 (VIER F-BOX PROTEINE 1)	O.I.	H.G.	S.X.	Please select
0.13	13.3	1614437_at	At4g17900	-	-	5e-1	At3g25882	NIMIN-2 (NIM1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.06	6.8	1610597_at	At4g17900	hypothetical protein LOC100251901	-	2e-9	At2g24100	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	1607595_at	At4g17900	similar to serine/threonine protein phosphatase 1; PP1	-	5e-43	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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