Co-expression analysis

Gene ID Gma.11341.3.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At4g17900: zinc-binding family protein (HF=8e-26)
Module size 6 genes
NF 0.48
%ile 78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6181.80.98Gma.11341.3.S1_s_atBM177332--8e-26At4g17900zinc-binding family proteinO.I.H.G.S.X.
0.5071.70.98GmaAffx.92861.1.S1_s_atCF808586--8e-2At1g20693HMGB2 (HIGH MOBILITY GROUP B 2)O.I.H.G.S.X.
0.5071.70.98GmaAffx.24666.1.S1_atCA783210--2e-1At2g39705RTFL8 (ROTUNDIFOLIA LIKE 8)O.I.H.G.S.X.
0.4259.30.98GmaAffx.65140.1.S1_atBI700031--7e-2At4g33670L-galactose dehydrogenase (L-GalDH)O.I.H.G.S.X.
0.4057.10.98Gma.17739.1.S1_atAW310535--4e-1At2g04220unknown proteinO.I.H.G.S.X.
0.3346.10.98PsAffx.psHA006iH10r_s_atPsAffx.psHA006iH10r--1e+0At2g28140unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g17900, orthologous to the query gene, Gma.11341.3.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2726.2At4g17900827514zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.4659.8At1g63720842676-F:unknown;P:unknown;C:unknown;MPFOVBO.I.H.G.S.X.
0.3235.7At1g18390838420ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.2319.3At5g18490831967unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBOO.I.H.G.S.X.
0.2217.5At1g14370837999APK2A (PROTEIN KINASE 2A)Encodes protein kinase APK2a.O.I.H.G.S.X.
0.2217.5At1g62420842540unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.2014.4At2g23320816864WRKY15Encodes WRKY DNA-binding protein 15 (WRKY15).O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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